Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10174225	0.85[EUR][1000 genomes]
rs10177513	0.84[EUR][1000 genomes]
rs10497699	1.00[CHB][hapmap]
rs11684869	1.00[CHB][hapmap]
rs13406671	0.82[EUR][1000 genomes]
rs1519182	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1606931	0.84[AFR][1000 genomes]
rs17198773	1.00[CHB][hapmap]
rs17198780	1.00[CHB][hapmap]
rs17198787	1.00[CHB][hapmap]
rs17270952	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs17270966	1.00[CHB][hapmap]
rs17270973	1.00[CHB][hapmap]
rs2680629	0.88[EUR][1000 genomes]
rs2683015	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2683016	0.88[EUR][1000 genomes]
rs55726777	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62182067	0.84[EUR][1000 genomes]
rs6414123	0.92[AFR][1000 genomes]
rs6761847	0.90[AFR][1000 genomes]
rs7577872	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7582435	0.86[AFR][1000 genomes]
rs7599216	0.86[AFR][1000 genomes]
rs7606355	0.90[AFR][1000 genomes]
rs9808245	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1014747	chr2:190097979-190132854	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv875614	chr2:190110841-190254758	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190119800-190127800	Weak transcription	Aorta	Aorta
2	chr2:190123200-190132200	Weak transcription	Pancreas	Pancrea
3	chr2:190123600-190129600	Weak transcription	Psoas Muscle	Psoas
4	chr2:190125400-190127800	Weak transcription	Fetal Muscle Leg	muscle
5	chr2:190126600-190127800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr2:190126600-190129200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:190126600-190129800	Weak transcription	NHDF-Ad	bronchial
8	chr2:190126600-190130000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:190126600-190130000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:190126600-190130400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:190126600-190132200	Weak transcription	NH-A	brain
12	chr2:190126600-190132400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:190126800-190132000	Weak transcription	Osteobl	bone
14	chr2:190127000-190132000	Weak transcription	NHLF	lung
15	chr2:190127200-190131800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr2:190127200-190133200	Weak transcription	Fetal Lung	lung

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