Variant report

Variant	rs55726777
Chromosome Location	chr2:190149441-190149442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:190139713..190141267-chr2:190148148..190150261,2	MCF-7	breast:
2	chr2:190143476..190146248-chr2:190148193..190151075,3	MCF-7	breast:
3	chr2:190087466..190090346-chr2:190148672..190151105,2	MCF-7	breast:
4	chr2:190118168..190119811-chr2:190148102..190150928,2	MCF-7	breast:
5	chr2:190088767..190093088-chr2:190148429..190152827,7	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10174225	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10177513	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10207860	0.85[AFR][1000 genomes]
rs10931402	0.84[ASN][1000 genomes]
rs10931406	0.84[ASN][1000 genomes]
rs10931410	0.84[ASN][1000 genomes]
rs11675295	0.84[ASN][1000 genomes]
rs11676812	0.84[ASN][1000 genomes]
rs11684869	0.84[ASN][1000 genomes]
rs13406671	0.85[EUR][1000 genomes]
rs1464136	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1515873	0.84[ASN][1000 genomes]
rs1519182	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17198773	0.84[ASN][1000 genomes]
rs17198780	0.92[ASN][1000 genomes]
rs17198787	0.81[ASN][1000 genomes]
rs17198829	0.84[ASN][1000 genomes]
rs17270952	0.86[ASN][1000 genomes]
rs17270966	0.92[ASN][1000 genomes]
rs17270973	0.81[ASN][1000 genomes]
rs17270987	0.81[ASN][1000 genomes]
rs1996576	0.82[EUR][1000 genomes]
rs2680629	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2683015	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2683016	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35598715	0.84[ASN][1000 genomes]
rs55851872	0.81[ASN][1000 genomes]
rs59031473	0.84[ASN][1000 genomes]
rs62182067	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62182415	0.84[ASN][1000 genomes]
rs62182420	0.81[ASN][1000 genomes]
rs62182421	0.84[ASN][1000 genomes]
rs62182454	0.89[ASN][1000 genomes]
rs62182457	0.81[ASN][1000 genomes]
rs62182458	0.84[ASN][1000 genomes]
rs62182459	0.89[ASN][1000 genomes]
rs62183794	0.84[ASN][1000 genomes]
rs62183841	0.84[ASN][1000 genomes]
rs62183844	0.84[ASN][1000 genomes]
rs62183845	0.84[ASN][1000 genomes]
rs72910347	0.81[ASN][1000 genomes]
rs72910360	0.89[ASN][1000 genomes]
rs7577872	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9808245	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv875614	chr2:190110841-190254758	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190141000-190149600	Weak transcription	HSMM	muscle
2	chr2:190141200-190150200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:190142800-190149600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:190146200-190149800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:190146200-190149800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr2:190146400-190149600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:190149000-190150800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:190149200-190149600	Enhancers	A549	lung
9	chr2:190149200-190151000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:190149200-190153800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr2:190149400-190149600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr2:190149400-190149600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:190149400-190149600	Enhancers	HMEC	breast
14	chr2:190149400-190150600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:190149400-190150800	Enhancers	Osteobl	bone
16	chr2:190149400-190152400	Enhancers	Hela-S3	cervix
17	chr2:190149400-190153400	Enhancers	NHDF-Ad	bronchial
18	chr2:190149400-190153600	Enhancers	NH-A	brain
19	chr2:190149400-190153600	Enhancers	NHLF	lung

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