Variant report

Variant	rs62182458
Chromosome Location	chr2:190047541-190047542
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:190045375..190047744-chr2:190084388..190086686,2	MCF-7	breast:
2	chr2:190039205..190041419-chr2:190045253..190047798,2	MCF-7	breast:
3	chr2:190045305..190048072-chr2:190048606..190050123,2	MCF-7	breast:
4	chr2:190045819..190048610-chr2:190053101..190054817,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10497699	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10931402	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10931406	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10931410	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11675295	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11676812	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11677073	0.82[ASN][1000 genomes]
rs11678388	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11681937	0.82[ASN][1000 genomes]
rs11684417	0.82[ASN][1000 genomes]
rs11684869	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11687908	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11690774	0.94[EUR][1000 genomes]
rs11693810	0.82[ASN][1000 genomes]
rs11695837	0.87[EUR][1000 genomes]
rs12472232	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1515873	0.83[ASN][1000 genomes]
rs1515875	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1519185	0.82[ASN][1000 genomes]
rs1520862	0.82[ASN][1000 genomes]
rs17198773	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17198780	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17198787	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17198815	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17198829	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17270966	0.86[ASN][1000 genomes]
rs17270973	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17270987	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17271008	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17271015	0.82[ASN][1000 genomes]
rs1996576	0.82[ASN][1000 genomes]
rs2683013	0.82[ASN][1000 genomes]
rs2683014	0.82[ASN][1000 genomes]
rs35598715	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55726777	0.84[ASN][1000 genomes]
rs55851872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56252219	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56381644	0.80[EUR][1000 genomes]
rs59031473	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61130121	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61528955	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62182060	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62182061	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62182066	0.82[ASN][1000 genomes]
rs62182068	0.82[ASN][1000 genomes]
rs62182069	0.82[ASN][1000 genomes]
rs62182415	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62182421	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62182454	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62182457	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62182459	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62183794	0.94[ASN][1000 genomes]
rs62183841	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62183844	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62183845	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62183846	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62183847	0.85[EUR][1000 genomes]
rs62183848	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72908368	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72908382	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72910347	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72910360	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72912280	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72912286	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72914141	0.82[ASN][1000 genomes]
rs7564429	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7586853	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190045000-190048000	Enhancers	Fetal Intestine Large	intestine
2	chr2:190045800-190053000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr2:190045800-190056600	Weak transcription	HSMM	muscle
4	chr2:190046600-190057600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:190047000-190049200	Enhancers	A549	lung

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