Variant report

Variant	rs1464311
Chromosome Location	chr3:118201229-118201230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1401958	1.00[ASN][1000 genomes]
rs1464310	1.00[ASN][1000 genomes]
rs17676297	1.00[ASN][1000 genomes]
rs2946811	1.00[ASN][1000 genomes]
rs2946813	1.00[ASN][1000 genomes]
rs2946815	0.92[ASN][1000 genomes]
rs2946816	1.00[ASN][1000 genomes]
rs2970119	1.00[ASN][1000 genomes]
rs2970120	1.00[ASN][1000 genomes]
rs2970122	1.00[ASN][1000 genomes]
rs62274857	0.83[ASN][1000 genomes]
rs6808261	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460829	chr3:118195601-118229370	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv591349	chr3:118195601-118229370	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1464311	PARP14	cis	cerebellum	SCAN
rs1464311	DTX3L	cis	parietal	SCAN
rs1464311	SEC22A	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118199000-118202200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr3:118199600-118202000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:118199600-118202000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:118200600-118205200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:118200800-118202000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:118200800-118202000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:118200800-118207600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:118201000-118201400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:118201200-118201600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:118201200-118201600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr3:118201200-118201600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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