Variant report

Variant	rs17676297
Chromosome Location	chr3:118199897-118199898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1401958	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464310	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464311	1.00[ASN][1000 genomes]
rs1554385	0.81[AMR][1000 genomes]
rs2946811	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2946813	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2946815	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2946816	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970119	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970120	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970122	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274857	0.83[ASN][1000 genomes]
rs6808261	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460829	chr3:118195601-118229370	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv591349	chr3:118195601-118229370	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17676297	PARP14	cis	cerebellum	SCAN
rs17676297	LRRC58	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118197200-118200800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:118197200-118201200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:118197200-118201200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:118198800-118200800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:118199000-118200000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:118199000-118202200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:118199200-118201200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:118199600-118202000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:118199600-118202000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:118199800-118201000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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