Variant report

Variant	rs1464900
Chromosome Location	chr7:71076641-71076642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10235822	0.83[ASN][1000 genomes]
rs10257839	1.00[EUR][1000 genomes]
rs10273024	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10275749	1.00[EUR][1000 genomes]
rs10280626	1.00[JPT][hapmap]
rs10950271	1.00[CHD][hapmap]
rs11972101	1.00[MEX][hapmap]
rs11972408	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11972420	1.00[JPT][hapmap]
rs11973528	1.00[ASN][1000 genomes]
rs11975523	0.83[ASN][1000 genomes]
rs11975959	1.00[EUR][1000 genomes]
rs11982829	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11983226	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11983547	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1404955	1.00[JPT][hapmap]
rs1464901	1.00[EUR][1000 genomes]
rs1464904	1.00[CHD][hapmap]
rs1467333	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs17143750	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17143763	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17143779	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1880636	1.00[JPT][hapmap]
rs1917737	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34083706	1.00[ASN][1000 genomes]
rs34636742	1.00[ASN][1000 genomes]
rs36185213	0.83[ASN][1000 genomes]
rs4392778	1.00[MEX][hapmap]
rs4394286	1.00[MEX][hapmap]
rs4425646	1.00[MEX][hapmap]
rs4717607	1.00[EUR][1000 genomes]
rs4719157	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4719160	0.83[ASN][1000 genomes]
rs56735040	1.00[EUR][1000 genomes]
rs58130753	0.83[ASN][1000 genomes]
rs59399850	1.00[EUR][1000 genomes]
rs60120787	1.00[EUR][1000 genomes]
rs6947665	1.00[EUR][1000 genomes]
rs6961952	1.00[JPT][hapmap]
rs6964202	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6971016	1.00[EUR][1000 genomes]
rs7456388	1.00[MEX][hapmap]
rs7789424	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7789555	1.00[EUR][1000 genomes]
rs7790588	0.83[ASN][1000 genomes]
rs7801821	1.00[EUR][1000 genomes]
rs7805142	1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv516049	chr7:71026463-71280299	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1019799	chr7:71027947-71274161	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv538938	chr7:71027947-71274161	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1016182	chr7:71033825-71285800	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1034811	chr7:71033825-71288961	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1024288	chr7:71039619-71285800	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1027835	chr7:71055226-71281334	Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv538939	chr7:71055226-71281334	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1026364	chr7:71055226-71287960	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv538940	chr7:71055226-71287960	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv948337	chr7:71057204-71277518	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71024800-71079400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:71054200-71077200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:71067200-71077000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:71073000-71077200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:71073200-71077600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:71075200-71080200	Enhancers	Ovary	ovary
7	chr7:71075400-71080800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:71075600-71077400	Enhancers	Fetal Lung	lung
9	chr7:71075800-71077400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr7:71075800-71077800	Weak transcription	Adipose Nuclei	Adipose
11	chr7:71075800-71078600	Enhancers	Aorta	Aorta
12	chr7:71076000-71078000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:71076000-71079400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:71076200-71077400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:71076200-71077400	Enhancers	Brain Angular Gyrus	brain
16	chr7:71076200-71077600	Enhancers	Brain Hippocampus Middle	brain
17	chr7:71076200-71080800	Enhancers	Brain Cingulate Gyrus	brain
18	chr7:71076200-71081400	Enhancers	Fetal Muscle Leg	muscle
19	chr7:71076400-71077000	Enhancers	Spleen	Spleen
20	chr7:71076400-71077400	Enhancers	Brain Germinal Matrix	brain
21	chr7:71076600-71077800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:71076600-71077800	Enhancers	Brain Anterior Caudate	brain
23	chr7:71076600-71078000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr7:71076600-71079000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr7:71076600-71079000	Enhancers	HSMMtube	muscle
26	chr7:71076600-71080200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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