Variant report

Variant	rs17143750
Chromosome Location	chr7:71104742-71104743
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10246838	0.86[ASN][1000 genomes]
rs10273024	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10280626	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11972408	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11972420	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11973528	0.83[ASN][1000 genomes]
rs11975523	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11975959	0.86[ASN][1000 genomes]
rs11982829	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11983226	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11983547	1.00[JPT][hapmap]
rs1404955	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1464900	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1467333	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17143763	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17143779	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1880636	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1917737	1.00[ASN][1000 genomes]
rs2867477	0.86[ASN][1000 genomes]
rs34083706	0.83[ASN][1000 genomes]
rs34636742	0.83[ASN][1000 genomes]
rs35487221	0.83[ASN][1000 genomes]
rs4263633	0.86[ASN][1000 genomes]
rs4484575	0.86[ASN][1000 genomes]
rs4719157	1.00[ASN][1000 genomes]
rs4719160	1.00[ASN][1000 genomes]
rs57799997	0.86[ASN][1000 genomes]
rs60120787	0.86[ASN][1000 genomes]
rs60298147	0.86[ASN][1000 genomes]
rs6947665	0.86[ASN][1000 genomes]
rs6961952	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6964202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6971170	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs6978924	0.83[ASN][1000 genomes]
rs7789424	1.00[ASN][1000 genomes]
rs7789555	0.86[ASN][1000 genomes]
rs7790588	1.00[ASN][1000 genomes]
rs7795733	0.86[ASN][1000 genomes]
rs7805142	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv516049	chr7:71026463-71280299	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1019799	chr7:71027947-71274161	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv538938	chr7:71027947-71274161	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1016182	chr7:71033825-71285800	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1034811	chr7:71033825-71288961	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1024288	chr7:71039619-71285800	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1027835	chr7:71055226-71281334	Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv538939	chr7:71055226-71281334	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1026364	chr7:71055226-71287960	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv538940	chr7:71055226-71287960	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv948337	chr7:71057204-71277518	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71097400-71109800	Weak transcription	Aorta	Aorta
2	chr7:71099000-71114000	Weak transcription	Ovary	ovary
3	chr7:71099200-71108200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:71101600-71108600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:71101800-71113600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:71102000-71114600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:71102400-71105000	Enhancers	Fetal Brain Male	brain
8	chr7:71102800-71112400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr7:71102800-71112800	Weak transcription	Fetal Muscle Leg	muscle
10	chr7:71103200-71112400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:71104000-71105000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:71104200-71104800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr7:71104400-71104800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:71104400-71105000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:71104400-71106000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:71104600-71104800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr7:71104600-71108400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:71104600-71113600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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