Variant report

Variant	rs14654
Chromosome Location	chr1:150325552-150325553
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150325534..150329741-chr1:150331165..150334243,4	MCF-7	breast:
2	chr1:150292478..150295575-chr1:150323034..150326109,3	MCF-7	breast:
3	chr1:150322416..150329853-chr1:150334337..150340134,8	MCF-7	breast:
4	chr1:150323928..150327904-chr1:150334060..150337308,4	K562	blood:
5	chr1:150320692..150323339-chr1:150324377..150326358,3	K562	blood:
6	chr1:150324607..150326424-chr1:150338818..150340910,2	K562	blood:
7	chr1:150319744..150323339-chr1:150324054..150326186,4	K562	blood:

Variant related genes	Relation type
ENSG00000117360	Chromatin interaction
ENSG00000163125	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1382572	1.00[MEX][hapmap]
rs16835865	1.00[MEX][hapmap]
rs6685607	1.00[MEX][hapmap]
rs942451	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150295200-150331800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:150295400-150329600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:150295600-150328200	Strong transcription	Primary B cells from peripheral blood	blood
4	chr1:150295800-150329800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:150296000-150329800	Strong transcription	Fetal Intestine Large	intestine
6	chr1:150296000-150329800	Strong transcription	Fetal Thymus	thymus
7	chr1:150296200-150326800	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:150296400-150328600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:150296400-150328600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:150296600-150326800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:150296600-150327200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr1:150296600-150327200	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr1:150296600-150328400	Strong transcription	Placenta	Placenta
14	chr1:150296600-150328600	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr1:150296600-150328600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:150296600-150328800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:150296600-150329600	Strong transcription	Fetal Muscle Trunk	muscle
18	chr1:150296800-150328400	Strong transcription	Liver	Liver
19	chr1:150296800-150328600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr1:150296800-150328600	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr1:150296800-150328600	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr1:150296800-150329800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:150297000-150328000	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr1:150297000-150328200	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr1:150297000-150328600	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr1:150297000-150330000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr1:150297000-150330800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr1:150297200-150326600	Strong transcription	Fetal Lung	lung
29	chr1:150297200-150328400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr1:150297200-150329200	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr1:150297200-150329600	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr1:150297400-150327600	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr1:150297400-150327600	Strong transcription	Thymus	Thymus
34	chr1:150297400-150327800	Strong transcription	Fetal Muscle Leg	muscle
35	chr1:150297400-150328000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:150297400-150328000	Strong transcription	Duodenum Mucosa	Duodenum
37	chr1:150297400-150328200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr1:150297400-150328600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr1:150297400-150328600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr1:150297400-150329000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr1:150297400-150329600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr1:150298000-150328600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr1:150298600-150328400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr1:150299000-150326400	Strong transcription	Dnd41	blood
45	chr1:150299000-150326600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr1:150300600-150328000	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr1:150300800-150328000	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr1:150303800-150327600	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr1:150305200-150328000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr1:150305600-150336200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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