Variant report

Variant	rs942451
Chromosome Location	chr1:150185776-150185777
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150182720..150184289-chr1:150184985..150187517,2	MCF-7	breast:
2	chr1:150182307..150185860-chr1:150205787..150209000,3	K562	blood:
3	chr1:149956254..149958159-chr1:150184298..150186686,2	MCF-7	breast:
4	chr1:150184759..150186606-chr1:150253891..150255792,2	MCF-7	breast:
5	chr1:149854142..149859760-chr1:150182757..150186625,7	MCF-7	breast:
6	chr1:150185544..150187613-chr1:150191565..150193238,2	MCF-7	breast:
7	chr1:150184319..150187106-chr1:150241598..150243125,2	MCF-7	breast:
8	chr1:150184020..150189547-chr1:150205905..150210191,12	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000266187	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000159208	Chromatin interaction
ENSG00000117362	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000143401	Chromatin interaction
ENSG00000222222	Chromatin interaction
ENSG00000184678	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1382572	1.00[MEX][hapmap]
rs14654	1.00[MEX][hapmap]
rs16835865	1.00[MEX][hapmap]
rs17267090	0.86[AFR][1000 genomes]
rs6685607	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150184200-150195800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:150184200-150206600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:150185400-150185800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr1:150185400-150185800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:150185400-150185800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr1:150185400-150185800	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr1:150185400-150185800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:150185400-150185800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:150185400-150185800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:150185400-150185800	Flanking Active TSS	Brain Hippocampus Middle	brain
11	chr1:150185400-150185800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
12	chr1:150185400-150185800	Flanking Active TSS	Brain Substantia Nigra	brain
13	chr1:150185400-150185800	Flanking Active TSS	Colon Smooth Muscle	Colon
14	chr1:150185400-150185800	Enhancers	Duodenum Mucosa	Duodenum
15	chr1:150185400-150185800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr1:150185400-150185800	Enhancers	Fetal Intestine Large	intestine
17	chr1:150185400-150185800	Enhancers	Fetal Intestine Small	intestine
18	chr1:150185400-150185800	Enhancers	Fetal Stomach	stomach
19	chr1:150185400-150185800	Enhancers	Fetal Thymus	thymus
20	chr1:150185400-150185800	Flanking Active TSS	Stomach Smooth Muscle	stomach
21	chr1:150185400-150185800	Flanking Active TSS	GM12878-XiMat	blood
22	chr1:150185400-150185800	Flanking Active TSS	Hela-S3	cervix
23	chr1:150185400-150185800	Enhancers	HUVEC	blood vessel
24	chr1:150185400-150186000	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr1:150185400-150186000	Enhancers	Primary B cells from peripheral blood	blood
26	chr1:150185400-150186000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr1:150185400-150186000	Flanking Active TSS	Adipose Nuclei	Adipose
28	chr1:150185400-150186000	Flanking Active TSS	Liver	Liver
29	chr1:150185400-150186000	Enhancers	Left Ventricle	heart
30	chr1:150185400-150186200	Enhancers	Stomach Mucosa	stomach
31	chr1:150185400-150186200	Enhancers	Spleen	Spleen
32	chr1:150185400-150186600	Active TSS	Brain Anterior Caudate	brain
33	chr1:150185400-150186800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr1:150185400-150186800	Flanking Active TSS	Dnd41	blood
35	chr1:150185600-150185800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr1:150185600-150185800	Enhancers	Primary B cells from cord blood	blood
37	chr1:150185600-150185800	Enhancers	Primary hematopoietic stem cells	blood
38	chr1:150185600-150185800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr1:150185600-150185800	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr1:150185600-150185800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
41	chr1:150185600-150185800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr1:150185600-150185800	Flanking Active TSS	Brain Cingulate Gyrus	brain
43	chr1:150185600-150185800	Enhancers	Fetal Muscle Trunk	muscle
44	chr1:150185600-150185800	Flanking Active TSS	Fetal Muscle Leg	muscle
45	chr1:150185600-150185800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr1:150185600-150185800	Flanking Active TSS	A549	lung
47	chr1:150185600-150185800	Enhancers	HSMM	muscle
48	chr1:150185600-150185800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr1:150185600-150185800	Enhancers	NHDF-Ad	bronchial
50	chr1:150185600-150186000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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