Variant report

Variant	rs17267090
Chromosome Location	chr1:150180932-150180933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57412226	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61458224	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6677454	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6694087	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6698952	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73009596	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs942451	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150180200-150185200	Weak transcription	Hela-S3	cervix
2	chr1:150180200-150185400	Weak transcription	Liver	Liver
3	chr1:150180200-150185400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr1:150180200-150185400	Weak transcription	Fetal Intestine Large	intestine
5	chr1:150180200-150185400	Weak transcription	Fetal Intestine Small	intestine
6	chr1:150180200-150185400	Weak transcription	Stomach Mucosa	stomach
7	chr1:150180200-150185400	Weak transcription	A549	lung
8	chr1:150180200-150185400	Weak transcription	HepG2	liver
9	chr1:150180400-150185400	Weak transcription	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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