Variant report

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:45016954..45017640-chr19:45055278..45056118,2	MCF-7	breast:
2	chr19:45008514..45010205-chr19:45015608..45018022,2	MCF-7	breast:

(count:9 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF180-1	chr19:45017231-45017348	ENSG00000176395
2	lnc-ZNF180-1	chr19:45017231-45017348	ENSG00000176395
3	lnc-ZNF180-1	chr19:45017231-45017348	ENSG00000176395
4	lnc-ZNF180-1	chr19:45017231-45017348	ENSG00000176395
5	lnc-ZNF180-1	chr19:45017231-45017348	ENSG00000176395
6	lnc-ZNF180-1	chr19:45017231-45017348	ENSG00000176395
7	lnc-ZNF180-1	chr19:45017231-45017348	ENSG00000176395
8	lnc-ZNF180-1	chr19:45017231-45017348	ENSG00000176395
9	lnc-ZNF180-1	chr19:45017231-45017348	ENSG00000176395

No data

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10402981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10407028	1.00[JPT][hapmap]
rs10407556	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11668999	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs13345032	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16959164	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs16979124	1.00[JPT][hapmap]
rs16979130	1.00[JPT][hapmap]
rs16979134	1.00[JPT][hapmap]
rs16979139	1.00[JPT][hapmap]
rs16979226	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1813064	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2117384	1.00[JPT][hapmap]
rs2571046	0.85[JPT][hapmap]
rs2571048	0.88[JPT][hapmap]
rs2571050	1.00[JPT][hapmap]
rs2686758	1.00[JPT][hapmap]
rs3786496	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55882928	0.87[EUR][1000 genomes]
rs926020	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061350	chr19:44869075-45035469	Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs1465723	IL4I1	cis	parietal	SCAN
rs1465723	PPP1R15A	cis	cerebellum	SCAN
rs1465723	ASPDH	cis	parietal	SCAN
rs1465723	ZNF432	cis	cerebellum	SCAN
rs1465723	RUVBL2	cis	parietal	SCAN
rs1465723	EXOC3L2	cis	cerebellum	SCAN
rs1465723	KLK10	cis	parietal	SCAN
rs1465723	ZNF321	cis	cerebellum	SCAN
rs1465723	PGLYRP1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:45017200-45017600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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