Variant report

Variant	rs16959164
Chromosome Location	chr19:45021252-45021253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10402981	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs10407028	0.88[JPT][hapmap]
rs10407556	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs13345032	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs1465723	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs16979124	0.88[JPT][hapmap]
rs16979130	0.88[JPT][hapmap]
rs16979134	0.88[JPT][hapmap]
rs16979139	0.86[JPT][hapmap]
rs16979226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2117384	0.88[JPT][hapmap]
rs2571046	0.85[JPT][hapmap]
rs2571050	0.88[JPT][hapmap]
rs2686758	0.84[JPT][hapmap]
rs3786496	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs59380439	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061350	chr19:44869075-45035469	Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:45020800-45021400	Bivalent Enhancer	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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