Variant report

Variant	rs1465779
Chromosome Location	chr15:31609890-31609891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:31608249..31610861-chr15:31620080..31623099,3	K562	blood:
2	chr15:31608249..31610861-chr15:31620873..31623099,2	K562	blood:
3	chr15:31592714..31596945-chr15:31609581..31612731,3	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10851525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12913847	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv903838	chr15:31452911-31672128	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv456747	chr15:31537496-31637996	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv568772	chr15:31537496-31637996	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv1839818	chr15:31594828-31637996	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv542318	chr15:31601016-31628938	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv1050482	chr15:31601016-31672921	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
14	nsv542319	chr15:31605961-31628938	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1465779	KLF13	cis	cerebellum	SCAN

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31605200-31613600	Weak transcription	Stomach Mucosa	stomach
2	chr15:31606800-31617200	Weak transcription	Spleen	Spleen
3	chr15:31607600-31610000	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr15:31607800-31615800	Enhancers	Thymus	Thymus
5	chr15:31607800-31616800	Enhancers	Fetal Thymus	thymus
6	chr15:31608200-31610000	Enhancers	Primary T cells from cord blood	blood
7	chr15:31608200-31610000	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr15:31608400-31610000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr15:31608400-31610000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr15:31608400-31610000	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr15:31608400-31610400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:31608600-31610000	Weak transcription	Pancreas	Pancrea
13	chr15:31608600-31610400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr15:31608800-31610600	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr15:31609200-31610600	Enhancers	Brain Hippocampus Middle	brain
16	chr15:31609200-31611000	Weak transcription	Primary B cells from cord blood	blood
17	chr15:31609200-31611600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr15:31609200-31611600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr15:31609200-31617000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr15:31609400-31610000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:31609400-31610400	Enhancers	Brain Angular Gyrus	brain
22	chr15:31609400-31610400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr15:31609400-31610600	Enhancers	Brain Anterior Caudate	brain
24	chr15:31609400-31610600	Enhancers	Fetal Brain Male	brain
25	chr15:31609400-31610800	Enhancers	Brain Cingulate Gyrus	brain
26	chr15:31609400-31611000	Enhancers	Fetal Muscle Leg	muscle
27	chr15:31609600-31610200	Enhancers	Brain Substantia Nigra	brain
28	chr15:31609600-31610400	Enhancers	Fetal Brain Female	brain
29	chr15:31609600-31616800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:31609800-31610000	Bivalent Enhancer	NHDF-Ad	bronchial
31	chr15:31609800-31610200	Flanking Active TSS	Liver	Liver
32	chr15:31609800-31610600	Enhancers	Brain Germinal Matrix	brain
33	chr15:31609800-31611200	Enhancers	Fetal Stomach	stomach
34	chr15:31609800-31612000	Weak transcription	Dnd41	blood
35	chr15:31609800-31614200	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr15:31609800-31616000	Weak transcription	Primary T helper cells fromperipheralblood	blood

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