Variant report

Variant	rs1466038
Chromosome Location	chr11:36363894-36363895
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11033560	0.84[ASN][1000 genomes]
rs12364237	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36360800-36364000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:36361000-36365000	Enhancers	Brain Cingulate Gyrus	brain
3	chr11:36361000-36365000	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr11:36361200-36365200	Enhancers	Brain Substantia Nigra	brain
5	chr11:36361400-36365400	Enhancers	Fetal Intestine Small	intestine
6	chr11:36361800-36364200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:36362600-36364000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:36362600-36364000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:36362600-36364200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:36362800-36364200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:36362800-36364200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:36362800-36366600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr11:36362800-36371200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:36363200-36366400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr11:36363400-36365200	Enhancers	Brain Hippocampus Middle	brain
16	chr11:36363600-36364400	Enhancers	Brain Angular Gyrus	brain
17	chr11:36363600-36365000	Enhancers	Fetal Intestine Large	intestine
18	chr11:36363800-36366600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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