Variant report

Variant	rs12364237
Chromosome Location	chr11:36362034-36362035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36359504..36362361-chr11:36368663..36371439,2	K562	blood:

Variant related genes	Relation type
ENSG00000135362	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11033549	1.00[CEU][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11033553	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11033554	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11033560	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033564	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11033565	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1160014	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1160015	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12099418	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12363040	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12364550	0.91[CEU][hapmap]
rs1466038	0.84[ASN][1000 genomes]
rs56985814	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58248666	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7101640	0.83[CEU][hapmap]
rs7129794	0.89[MEX][hapmap]
rs73443133	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73443135	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73443138	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7931498	0.94[ASN][1000 genomes]
rs7931590	1.00[CHB][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36360800-36364000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:36361000-36365000	Enhancers	Brain Cingulate Gyrus	brain
3	chr11:36361000-36365000	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr11:36361200-36362200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:36361200-36362400	Enhancers	Brain Angular Gyrus	brain
6	chr11:36361200-36362600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:36361200-36362600	Enhancers	Fetal Thymus	thymus
8	chr11:36361200-36362800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:36361200-36365200	Enhancers	Brain Substantia Nigra	brain
10	chr11:36361400-36362200	Enhancers	Fetal Intestine Large	intestine
11	chr11:36361400-36362600	Enhancers	Fetal Kidney	kidney
12	chr11:36361400-36362800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:36361400-36363000	Enhancers	Brain Hippocampus Middle	brain
14	chr11:36361400-36363800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:36361400-36365400	Enhancers	Fetal Intestine Small	intestine
16	chr11:36361600-36362200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:36361600-36362200	Enhancers	Fetal Brain Male	brain
18	chr11:36361600-36362800	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr11:36361600-36362800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:36361600-36363800	Weak transcription	Spleen	Spleen
21	chr11:36361800-36362800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:36361800-36364200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:36362000-36362600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:36362000-36362800	Enhancers	Primary hematopoietic stem cells	blood
25	chr11:36362000-36363200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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