Variant report

Variant	rs11033553
Chromosome Location	chr11:36349396-36349397
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11033549	0.91[CEU][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs11033554	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033560	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11033564	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033565	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1160014	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1160015	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12099418	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363040	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364237	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12364550	0.82[CEU][hapmap];0.84[MEX][hapmap]
rs56985814	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58248666	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129794	0.81[TSI][hapmap]
rs73443133	0.99[EUR][1000 genomes]
rs73443135	0.99[EUR][1000 genomes]
rs73443138	0.99[EUR][1000 genomes]
rs7931498	1.00[ASN][1000 genomes]
rs7931590	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36341400-36355800	Weak transcription	Brain Substantia Nigra	brain
2	chr11:36348200-36349600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr11:36348200-36349600	Enhancers	Primary B cells from cord blood	blood
4	chr11:36348400-36349600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr11:36348400-36349600	Enhancers	Primary B cells from peripheral blood	blood
6	chr11:36348400-36349800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr11:36348400-36349800	Enhancers	Fetal Intestine Large	intestine
8	chr11:36348400-36352600	Enhancers	Fetal Intestine Small	intestine
9	chr11:36348600-36349800	Enhancers	Placenta Amnion	Placenta Amnion
10	chr11:36348800-36349600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr11:36348800-36349600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr11:36348800-36350600	Weak transcription	NHEK	skin
13	chr11:36349000-36349600	Enhancers	Stomach Mucosa	stomach
14	chr11:36349200-36349800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr11:36349200-36354800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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