Variant report

Variant	rs1160015
Chromosome Location	chr11:36350665-36350666
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36350564..36353471-chr11:36357236..36359880,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11033549	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11033553	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033554	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033560	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11033564	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033565	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1160014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12099418	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363040	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364237	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12364550	0.90[CEU][hapmap]
rs56985814	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58248666	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101640	0.81[CEU][hapmap]
rs73443133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73443135	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73443138	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73443153	0.81[AFR][1000 genomes]
rs7931498	1.00[ASN][1000 genomes]
rs7931590	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36341400-36355800	Weak transcription	Brain Substantia Nigra	brain
2	chr11:36348400-36352600	Enhancers	Fetal Intestine Small	intestine
3	chr11:36349200-36354800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:36349600-36350800	Weak transcription	Stomach Mucosa	stomach
5	chr11:36349600-36352000	Enhancers	Hela-S3	cervix
6	chr11:36350200-36352600	Enhancers	Fetal Intestine Large	intestine
7	chr11:36350600-36351000	Enhancers	HMEC	breast
8	chr11:36350600-36351000	Enhancers	NHEK	skin
9	chr11:36350600-36351000	Enhancers	Osteobl	bone
10	chr11:36350600-36351400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:36350600-36351400	Enhancers	NH-A	brain

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