Variant report

Variant	rs11033549
Chromosome Location	chr11:36341483-36341484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11033553	0.91[CEU][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs11033554	0.99[EUR][1000 genomes]
rs11033560	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11033564	1.00[CEU][hapmap];0.88[GIH][hapmap];0.90[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11033565	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1160014	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs1160015	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12099418	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12363040	0.99[EUR][1000 genomes]
rs12364237	1.00[CEU][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12364550	0.91[CEU][hapmap]
rs56985814	1.00[EUR][1000 genomes]
rs58248666	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101640	0.83[CEU][hapmap]
rs7129794	0.81[TSI][hapmap]
rs73443133	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73443135	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73443138	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36336800-36343400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:36339600-36341600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr11:36339800-36341600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr11:36339800-36341600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr11:36339800-36342200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr11:36340200-36341600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:36340200-36342000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:36340800-36342600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:36341200-36343000	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:36341200-36346400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:36341200-36348400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:36341400-36341600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:36341400-36355800	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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