Variant report

Variant	rs11033564
Chromosome Location	chr11:36367117-36367118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11033549	1.00[CEU][hapmap];0.88[GIH][hapmap];0.90[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11033553	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033554	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033560	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11033565	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1160014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1160015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12099418	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363040	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12364550	0.91[CEU][hapmap]
rs56985814	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58248666	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101640	0.83[CEU][hapmap]
rs7129794	1.00[ASW][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap]
rs73443133	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73443135	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73443138	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7931498	1.00[ASN][1000 genomes]
rs7931590	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36362800-36371200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:36364400-36381800	Weak transcription	Brain Angular Gyrus	brain
3	chr11:36365200-36367200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:36365200-36374000	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:36365200-36374200	Weak transcription	Brain Substantia Nigra	brain
6	chr11:36366400-36367400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr11:36366400-36367400	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr11:36366600-36367400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:36366600-36367400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:36366600-36367400	Enhancers	Fetal Muscle Trunk	muscle
11	chr11:36366600-36367400	Enhancers	Pancreas	Pancrea
12	chr11:36366600-36367400	Enhancers	Placenta Amnion	Placenta Amnion
13	chr11:36366600-36367400	Enhancers	Stomach Mucosa	stomach
14	chr11:36366800-36367400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:36367000-36367400	Flanking Active TSS	Fetal Intestine Large	intestine
16	chr11:36367000-36367600	Flanking Active TSS	Duodenum Mucosa	Duodenum
17	chr11:36367000-36367600	Flanking Active TSS	Fetal Intestine Small	intestine
18	chr11:36367000-36367600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
19	chr11:36367000-36367600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
20	chr11:36367000-36375800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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