Variant report

Variant	rs12363040
Chromosome Location	chr11:36353671-36353672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11033549	0.99[EUR][1000 genomes]
rs11033553	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033554	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033560	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11033564	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033565	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1160014	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1160015	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12099418	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364237	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56985814	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58248666	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73443133	0.99[EUR][1000 genomes]
rs73443135	0.99[EUR][1000 genomes]
rs73443138	0.99[EUR][1000 genomes]
rs7931498	1.00[ASN][1000 genomes]
rs7931590	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36341400-36355800	Weak transcription	Brain Substantia Nigra	brain
2	chr11:36349200-36354800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:36351000-36354800	Weak transcription	NHEK	skin
4	chr11:36351000-36355200	Weak transcription	HMEC	breast
5	chr11:36351400-36354800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:36352000-36355000	Weak transcription	Hela-S3	cervix
7	chr11:36353200-36354800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:36353400-36361000	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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