Variant report

Variant	rs1466634
Chromosome Location	chr11:46418058-46418059
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46413148..46415878-chr11:46416015..46418632,3	MCF-7	breast:
2	chr11:46413333..46415363-chr11:46417315..46419574,2	MCF-7	breast:
3	chr11:46415996..46418970-chr11:46425126..46426689,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11038924	1.00[YRI][hapmap]
rs1489189	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1489190	1.00[YRI][hapmap]
rs1489193	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1873129	1.00[YRI][hapmap]
rs2029378	1.00[YRI][hapmap]
rs2087360	1.00[YRI][hapmap]
rs2864071	1.00[YRI][hapmap]
rs2864836	1.00[YRI][hapmap]
rs35935319	1.00[YRI][hapmap]
rs4376875	1.00[YRI][hapmap]
rs4550197	1.00[YRI][hapmap]
rs6485681	1.00[YRI][hapmap]
rs7928869	1.00[YRI][hapmap]
rs7942788	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs967754	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554201	chr11:46281835-46422686	Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv825867	chr11:46303184-46425613	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv1811345	chr11:46317062-46438072	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv554202	chr11:46334239-46469900	Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv309	chr11:46399678-46440503	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv1050614	chr11:46414720-46496732	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46413000-46425000	Weak transcription	Fetal Heart	heart
2	chr11:46414200-46429000	Weak transcription	Hela-S3	cervix
3	chr11:46414200-46432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:46414600-46418200	Weak transcription	NHLF	lung
5	chr11:46414600-46425800	Weak transcription	HSMM	muscle
6	chr11:46414600-46429200	Weak transcription	HMEC	breast
7	chr11:46414800-46418200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:46414800-46418200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr11:46414800-46418200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:46414800-46418400	Weak transcription	Osteobl	bone
11	chr11:46414800-46418800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:46414800-46424200	Weak transcription	Right Atrium	heart
13	chr11:46414800-46424600	Weak transcription	Psoas Muscle	Psoas
14	chr11:46414800-46426200	Weak transcription	NH-A	brain
15	chr11:46414800-46428600	Weak transcription	A549	lung
16	chr11:46414800-46429200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:46414800-46436800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:46415000-46418200	Weak transcription	Colon Smooth Muscle	Colon
19	chr11:46415000-46418400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:46415000-46418800	Weak transcription	Fetal Lung	lung
21	chr11:46415000-46424800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr11:46415000-46428800	Weak transcription	Stomach Mucosa	stomach
23	chr11:46415000-46429000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:46415000-46429200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr11:46415000-46432800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:46415200-46418200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:46415200-46418200	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr11:46415200-46418200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr11:46415200-46418200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:46415200-46418600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:46415200-46418600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr11:46415200-46418800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr11:46415200-46419000	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr11:46415200-46424400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr11:46415200-46424600	Weak transcription	Fetal Kidney	kidney
36	chr11:46415200-46426000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr11:46415200-46426800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr11:46415200-46430600	Weak transcription	K562	blood
39	chr11:46415400-46418400	Weak transcription	Fetal Thymus	thymus
40	chr11:46415400-46423400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr11:46415600-46418400	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr11:46416000-46418200	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr11:46416200-46418600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:46416200-46419400	Weak transcription	Primary B cells from cord blood	blood
45	chr11:46416200-46429000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr11:46416200-46429800	Weak transcription	HUVEC	blood vessel
47	chr11:46416400-46428400	Weak transcription	Small Intestine	intestine
48	chr11:46416400-46429200	Weak transcription	NHDF-Ad	bronchial
49	chr11:46416800-46419400	Strong transcription	Placenta Amnion	Placenta Amnion
50	chr11:46416800-46419800	Strong transcription	Brain Germinal Matrix	brain

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