Variant report

Variant	rs1467061
Chromosome Location	chrX:154055737-154055738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chrX:154055505-154056351	GM12878	blood:	n/a	n/a
2	POLR2A	chrX:154055721-154055988	ProgFib	skin:	n/a	n/a
3	CTCF	chrX:154055724-154055794	Medullo	brain:	n/a	n/a
4	TCF7L2	chrX:154055428-154055840	PANC-1	pancreas:	n/a	chrX:154055514-154055523
5	POLR2A	chrX:154055362-154056500	GM12891	blood:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	X:153994716-154000894..X:154053104-154056925	K562	blood:
2	X:153625659-153635385..X:154053104-154056925	GM12878	blood:
3	X:153967468-153979902..X:154053104-154056925	K562	blood:
4	X:153532787-153537523..X:154053104-154056925	K562	blood:
5	chrX:154047774..154050041-chrX:154055145..154056777,2	K562	blood:
6	X:154000894-154002691..X:154053104-154056925	GM12878	blood:
7	X:153635385-153648319..X:154053104-154056925	K562	blood:
8	X:154015910-154019964..X:154053104-154056925	H1-hESC	embryonic stem cell:	embryo
9	X:153586280-153597086..X:154053104-154056925	K562	blood:
10	X:153989469-153994716..X:154053104-154056925	GM12878	blood:

No data

No data

No data

Variant related genes	Relation type
SMIM9	TF binding region
ENSG00000207165	Chromatin interaction
ENSG00000196924	Chromatin interaction
ENSG00000130830	Chromatin interaction
ENSG00000013563	Chromatin interaction
ENSG00000007350	Chromatin interaction
ENSG00000102125	Chromatin interaction
ENSG00000160219	Chromatin interaction
ENSG00000147403	Chromatin interaction
ENSG00000130826	Chromatin interaction
ENSG00000206948	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12398789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1509787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1800291	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1936642	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap]
rs5945116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945122	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap]
rs5945249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap]
rs5945258	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap]
rs7053448	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs7058826	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap]
rs7061362	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap]
rs7063915	0.86[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154049400-154058600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chrX:154055000-154058000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chrX:154055000-154058000	Enhancers	Primary B cells from peripheral blood	blood
4	chrX:154055200-154055800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chrX:154055200-154056600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chrX:154055200-154057400	Enhancers	Duodenum Mucosa	Duodenum
7	chrX:154055400-154056200	Flanking Active TSS	GM12878-XiMat	blood
8	chrX:154055400-154056400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chrX:154055400-154056800	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chrX:154055600-154055800	Enhancers	Primary B cells from cord blood	blood
11	chrX:154055600-154056400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chrX:154055600-154056800	Enhancers	Rectal Mucosa Donor 31	rectum
13	chrX:154055600-154061200	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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