Variant report

Variant	rs1467424
Chromosome Location	chr14:63685828-63685829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10131665	1.00[EUR][1000 genomes]
rs11845716	1.00[EUR][1000 genomes]
rs11845811	1.00[EUR][1000 genomes]
rs11845913	1.00[EUR][1000 genomes]
rs17100852	1.00[ASN][1000 genomes]
rs17100884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17100885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17100924	1.00[EUR][1000 genomes]
rs17100980	1.00[EUR][1000 genomes]
rs17100987	1.00[EUR][1000 genomes]
rs17100988	1.00[EUR][1000 genomes]
rs17100990	1.00[EUR][1000 genomes]
rs17100992	1.00[EUR][1000 genomes]
rs17100995	1.00[EUR][1000 genomes]
rs17101002	1.00[EUR][1000 genomes]
rs1955672	1.00[EUR][1000 genomes]
rs1957780	1.00[EUR][1000 genomes]
rs4902217	1.00[AMR][1000 genomes]
rs4902222	1.00[EUR][1000 genomes]
rs56713551	1.00[EUR][1000 genomes]
rs57714062	1.00[EUR][1000 genomes]
rs57768197	1.00[EUR][1000 genomes]
rs58737358	1.00[EUR][1000 genomes]
rs59466499	1.00[EUR][1000 genomes]
rs60068448	1.00[EUR][1000 genomes]
rs60078514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60444475	1.00[EUR][1000 genomes]
rs61302639	1.00[EUR][1000 genomes]
rs61664340	1.00[EUR][1000 genomes]
rs6573502	1.00[EUR][1000 genomes]
rs7156973	1.00[EUR][1000 genomes]
rs7157776	1.00[EUR][1000 genomes]
rs73268396	1.00[EUR][1000 genomes]
rs7342496	1.00[EUR][1000 genomes]
rs7342500	1.00[EUR][1000 genomes]
rs737571	1.00[EUR][1000 genomes]
rs74058900	1.00[ASN][1000 genomes]
rs74060034	1.00[EUR][1000 genomes]
rs74060038	1.00[EUR][1000 genomes]
rs74060041	1.00[EUR][1000 genomes]
rs74060043	1.00[EUR][1000 genomes]
rs74060047	1.00[AMR][1000 genomes]
rs742905	1.00[EUR][1000 genomes]
rs761550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8007258	1.00[EUR][1000 genomes]
rs8010073	1.00[EUR][1000 genomes]
rs8012345	1.00[EUR][1000 genomes]
rs8014212	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv564893	chr14:63526931-63796122	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1045599	chr14:63540073-63765152	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv977586	chr14:63682790-63686865	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63672000-63717000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:63673400-63691000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:63673600-63689800	Weak transcription	Colon Smooth Muscle	Colon
4	chr14:63675800-63686000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:63676200-63707600	Weak transcription	Aorta	Aorta
6	chr14:63676400-63733600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:63679400-63717000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:63680000-63689600	Weak transcription	NH-A	brain
9	chr14:63680600-63689800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr14:63680600-63690600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr14:63680800-63687800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:63681000-63687800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr14:63681600-63690800	Weak transcription	Fetal Stomach	stomach
14	chr14:63681600-63691000	Weak transcription	Left Ventricle	heart
15	chr14:63681600-63691000	Weak transcription	Psoas Muscle	Psoas
16	chr14:63681600-63694600	Weak transcription	Fetal Muscle Leg	muscle
17	chr14:63682200-63690400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:63682200-63690600	Weak transcription	Fetal Lung	lung
19	chr14:63684000-63688400	Strong transcription	HUVEC	blood vessel
20	chr14:63685000-63686200	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr14:63685400-63686200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr14:63685600-63686000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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