Variant report

Variant	rs7157776
Chromosome Location	chr14:63867140-63867141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:63866982..63869213-chr14:64008832..64010696,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261242	Chromatin interaction
ENSG00000154001	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10131665	1.00[EUR][1000 genomes]
rs11845716	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11845811	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11845913	1.00[EUR][1000 genomes]
rs11847169	1.00[AMR][1000 genomes]
rs1467424	1.00[EUR][1000 genomes]
rs1472504	1.00[AMR][1000 genomes]
rs17100884	1.00[EUR][1000 genomes]
rs17100885	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17100924	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17100980	1.00[EUR][1000 genomes]
rs17100987	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17100988	1.00[EUR][1000 genomes]
rs17100990	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17100992	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17100995	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17101002	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17101144	1.00[CEU][hapmap]
rs17101245	1.00[AMR][1000 genomes]
rs17101253	1.00[AMR][1000 genomes]
rs1955672	1.00[EUR][1000 genomes]
rs1957780	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1988781	1.00[AMR][1000 genomes]
rs2236339	1.00[CEU][hapmap]
rs4902222	1.00[EUR][1000 genomes]
rs56713551	1.00[EUR][1000 genomes]
rs57530734	1.00[AMR][1000 genomes]
rs57714062	1.00[EUR][1000 genomes]
rs57768197	1.00[EUR][1000 genomes]
rs58308869	1.00[AMR][1000 genomes]
rs58737358	1.00[EUR][1000 genomes]
rs59282502	1.00[AMR][1000 genomes]
rs59466499	1.00[EUR][1000 genomes]
rs59574119	1.00[EUR][1000 genomes]
rs60068448	1.00[EUR][1000 genomes]
rs60078514	1.00[EUR][1000 genomes]
rs60444475	1.00[EUR][1000 genomes]
rs61302639	1.00[EUR][1000 genomes]
rs61664340	1.00[EUR][1000 genomes]
rs6573502	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7142618	1.00[AMR][1000 genomes]
rs7146697	1.00[AMR][1000 genomes]
rs7156973	1.00[EUR][1000 genomes]
rs73268396	1.00[EUR][1000 genomes]
rs7342496	1.00[EUR][1000 genomes]
rs7342500	1.00[EUR][1000 genomes]
rs737571	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs74060034	1.00[EUR][1000 genomes]
rs74060038	1.00[EUR][1000 genomes]
rs74060041	1.00[EUR][1000 genomes]
rs74060043	1.00[EUR][1000 genomes]
rs74060101	1.00[EUR][1000 genomes]
rs742905	1.00[EUR][1000 genomes]
rs761550	1.00[EUR][1000 genomes]
rs8007258	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8010073	1.00[EUR][1000 genomes]
rs8012345	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8014212	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8020691	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8022150	1.00[CEU][hapmap]
rs974700	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv832815	chr14:63750058-63913900	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1051684	chr14:63752916-63867677	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2751279	chr14:63754363-63871416	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv2761522	chr14:63765673-63867689	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1036375	chr14:63775037-63867296	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv1050897	chr14:63775037-63867677	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv1049638	chr14:63776289-63867296	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv902018	chr14:63786658-63884984	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63837800-63902200	Weak transcription	Small Intestine	intestine
2	chr14:63841800-63871800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:63843200-63898800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr14:63846400-63867400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:63849000-63868400	Weak transcription	Psoas Muscle	Psoas
6	chr14:63849000-63888000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:63851000-63871600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr14:63851200-63886000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr14:63851200-63902400	Weak transcription	Right Ventricle	heart
10	chr14:63851200-63903600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr14:63851200-63922000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr14:63851800-63869000	Strong transcription	Primary B cells from cord blood	blood
13	chr14:63852400-63882200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr14:63852600-63877000	Weak transcription	Spleen	Spleen
15	chr14:63852600-63899000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr14:63853200-63886600	Weak transcription	NH-A	brain
17	chr14:63853800-63867600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr14:63854000-63893400	Weak transcription	Fetal Brain Male	brain
19	chr14:63854600-63872000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr14:63854800-63867800	Weak transcription	Colon Smooth Muscle	Colon
21	chr14:63854800-63871000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr14:63854800-63871200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr14:63854800-63922400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr14:63855000-63886000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr14:63855400-63873200	Weak transcription	Fetal Kidney	kidney
26	chr14:63855600-63869800	Weak transcription	Brain Anterior Caudate	brain
27	chr14:63855800-63870600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr14:63856200-63869800	Weak transcription	Ovary	ovary
29	chr14:63856200-63883000	Weak transcription	K562	blood
30	chr14:63858000-63868200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr14:63858000-63871600	Weak transcription	Brain Germinal Matrix	brain
32	chr14:63858000-63877000	Weak transcription	Aorta	Aorta
33	chr14:63858000-63877400	Weak transcription	Esophagus	oesophagus
34	chr14:63858000-63880600	Weak transcription	Gastric	stomach
35	chr14:63858000-63890200	Weak transcription	Pancreas	Pancrea
36	chr14:63858200-63873400	Weak transcription	HepG2	liver
37	chr14:63858400-63900000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr14:63858600-63868200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr14:63858600-63891400	Weak transcription	Osteobl	bone
40	chr14:63859800-63869800	Weak transcription	Brain Hippocampus Middle	brain
41	chr14:63859800-63871400	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr14:63859800-63878800	Weak transcription	HSMMtube	muscle
43	chr14:63859800-63901600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr14:63860000-63871200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr14:63860000-63888000	Weak transcription	HUVEC	blood vessel
46	chr14:63860200-63880400	Weak transcription	Hela-S3	cervix
47	chr14:63860400-63877000	Weak transcription	Fetal Stomach	stomach
48	chr14:63860400-63877600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr14:63860400-63885600	Weak transcription	Fetal Intestine Small	intestine
50	chr14:63860600-63873400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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