Variant report

Variant	rs7142618
Chromosome Location	chr14:63926572-63926573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:63924386..63926717-chr14:63929643..63931464,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264995	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11847169	1.00[AMR][1000 genomes]
rs1472504	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs17101245	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs17101253	1.00[AMR][1000 genomes]
rs1988781	1.00[AMR][1000 genomes]
rs57530734	1.00[AMR][1000 genomes]
rs58308869	1.00[AMR][1000 genomes]
rs59282502	1.00[AMR][1000 genomes]
rs7146697	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7157776	1.00[AMR][1000 genomes]
rs8014212	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63905200-63937600	Weak transcription	Fetal Intestine Small	intestine
2	chr14:63905400-63937400	Weak transcription	HUVEC	blood vessel
3	chr14:63905600-63927000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:63906000-63934600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr14:63907000-63935000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr14:63916400-63927600	Weak transcription	HMEC	breast
7	chr14:63916600-63927000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:63917400-63926600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr14:63919800-63937400	Weak transcription	NHLF	lung
10	chr14:63919800-63938200	Weak transcription	Fetal Thymus	thymus
11	chr14:63920000-63934400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr14:63920000-63939200	Weak transcription	Thymus	Thymus
13	chr14:63920400-63926800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr14:63920400-63930800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:63920400-63930800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr14:63920400-63934600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr14:63920400-63937600	Weak transcription	Fetal Intestine Large	intestine
18	chr14:63920600-63926800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr14:63920600-63926800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr14:63920600-63934400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr14:63920600-63937800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr14:63920800-63926600	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr14:63920800-63931000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr14:63920800-63934400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr14:63920800-63936000	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr14:63920800-63936800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr14:63921000-63930600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr14:63921000-63937600	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr14:63921000-63937600	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr14:63921000-63937800	Weak transcription	Primary B cells from peripheral blood	blood
31	chr14:63921000-63944600	Weak transcription	Dnd41	blood
32	chr14:63921200-63935200	Weak transcription	Primary T cells from cord blood	blood
33	chr14:63921600-63937600	Weak transcription	Fetal Stomach	stomach
34	chr14:63922000-63926600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr14:63922000-63926600	Weak transcription	Colon Smooth Muscle	Colon
36	chr14:63922000-63926800	Weak transcription	Psoas Muscle	Psoas
37	chr14:63922000-63927000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr14:63922000-63927600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr14:63922000-63934400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr14:63922000-63935000	Weak transcription	NH-A	brain
41	chr14:63922000-63935200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr14:63922000-63936800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr14:63922000-63936800	Weak transcription	Esophagus	oesophagus
44	chr14:63922000-63936800	Weak transcription	Gastric	stomach
45	chr14:63922000-63936800	Weak transcription	Lung	lung
46	chr14:63922000-63937600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr14:63922000-63937600	Weak transcription	Right Ventricle	heart
48	chr14:63922000-63937600	Weak transcription	HSMMtube	muscle
49	chr14:63922000-63938200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr14:63922000-63941600	Weak transcription	Fetal Muscle Leg	muscle

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