Variant report

Variant	rs146754955
Chromosome Location	chr3:145923323-145923324
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012485	chr3:145861750-145947125	Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536758	chr3:145861750-145947125	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv877614	chr3:145903426-146025896	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv877615	chr3:145910430-145988231	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv877616	chr3:145921954-145983688	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145897000-145933600	Weak transcription	Fetal Stomach	stomach
2	chr3:145901000-145923800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:145902800-145923600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:145903000-145934800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:145905000-145933600	Weak transcription	NHLF	lung
6	chr3:145907000-145938600	Weak transcription	Fetal Intestine Small	intestine
7	chr3:145907600-145939200	Weak transcription	Brain Anterior Caudate	brain
8	chr3:145908200-145936400	Weak transcription	A549	lung
9	chr3:145909600-145939200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:145910400-145932400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:145910400-145940000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:145912200-145923800	Weak transcription	Fetal Muscle Leg	muscle
13	chr3:145912600-145923600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr3:145913800-145939200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr3:145914000-145923400	Weak transcription	Fetal Intestine Large	intestine
16	chr3:145914200-145937000	Weak transcription	Placenta	Placenta
17	chr3:145914600-145940200	Weak transcription	Gastric	stomach
18	chr3:145914800-145924200	Weak transcription	Aorta	Aorta
19	chr3:145914800-145940200	Weak transcription	Psoas Muscle	Psoas
20	chr3:145914800-145940400	Weak transcription	Spleen	Spleen
21	chr3:145917400-145925200	Strong transcription	Adipose Nuclei	Adipose
22	chr3:145917800-145923800	Weak transcription	HSMMtube	muscle
23	chr3:145917800-145940400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr3:145918000-145940400	Weak transcription	Pancreas	Pancrea
25	chr3:145918200-145924200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr3:145918200-145924200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr3:145918400-145940400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:145918600-145923600	Weak transcription	HepG2	liver
29	chr3:145918800-145924200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr3:145918800-145925200	Weak transcription	Fetal Kidney	kidney
31	chr3:145919000-145934800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:145920400-145925800	Strong transcription	Liver	Liver
33	chr3:145920600-145940600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr3:145921400-145923400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr3:145921400-145923400	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr3:145921600-145923600	Weak transcription	Ovary	ovary
37	chr3:145921600-145940200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr3:145922000-145925000	Weak transcription	Colonic Mucosa	Colon
39	chr3:145922000-145925800	Weak transcription	Hela-S3	cervix
40	chr3:145922000-145934800	Weak transcription	Left Ventricle	heart
41	chr3:145922200-145935000	Weak transcription	NHDF-Ad	bronchial
42	chr3:145922400-145925600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr3:145922600-145925800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr3:145922600-145933400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr3:145922600-145940400	Weak transcription	Lung	lung
46	chr3:145923000-145924600	Strong transcription	Osteobl	bone
47	chr3:145923000-145925200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr3:145923000-145925600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr3:145923000-145925600	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr3:145923000-145926000	Strong transcription	HUVEC	blood vessel

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