Variant report

Variant	rs1468334
Chromosome Location	chr14:72996363-72996364
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72991831..72993814-chr14:72995434..72997044,2	MCF-7	breast:
2	chr14:72990881..72993207-chr14:72993886..72996704,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1157500	0.80[CEU][hapmap]
rs12885387	0.81[CEU][hapmap]
rs2238171	0.84[JPT][hapmap]
rs2238175	0.85[JPT][hapmap]
rs2238176	0.85[JPT][hapmap]
rs3784044	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7161138	1.00[JPT][hapmap]
rs7161351	1.00[JPT][hapmap]
rs757653	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs757654	0.84[JPT][hapmap]
rs8009343	0.86[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	esv1843592	chr14:72967991-73007547	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72984400-73011000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:72989800-72997600	Enhancers	HSMM	muscle
3	chr14:72991200-72998600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr14:72991200-72998800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr14:72991400-72998200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr14:72991400-73001600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr14:72991800-72997600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr14:72992200-72998000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr14:72992200-73001400	Weak transcription	Spleen	Spleen
10	chr14:72994400-72996400	Enhancers	Ovary	ovary
11	chr14:72994400-72996600	Enhancers	Fetal Stomach	stomach
12	chr14:72994800-72997200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:72995000-72996800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr14:72995000-72997000	Enhancers	Fetal Lung	lung
15	chr14:72995000-72997000	Enhancers	NH-A	brain
16	chr14:72995200-72997000	Enhancers	Brain Germinal Matrix	brain
17	chr14:72995400-72996600	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr14:72995400-72997600	Weak transcription	GM12878-XiMat	blood
19	chr14:72995400-72997600	Enhancers	HSMMtube	muscle
20	chr14:72995600-72997000	Enhancers	HMEC	breast
21	chr14:72995800-72997400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr14:72995800-73000200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr14:72996000-72996800	Weak transcription	Fetal Muscle Leg	muscle
24	chr14:72996000-72998000	Weak transcription	Fetal Thymus	thymus
25	chr14:72996000-72998800	Weak transcription	Primary B cells from cord blood	blood
26	chr14:72996200-72996600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:72996200-72996800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:72996200-72998600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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