Variant report

Variant	rs1157500
Chromosome Location	chr14:72995814-72995815
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72991831..72993814-chr14:72995434..72997044,2	MCF-7	breast:
2	chr14:72990881..72993207-chr14:72993886..72996704,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11158958	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs11621408	0.88[ASN][1000 genomes]
rs1468334	0.80[CEU][hapmap]
rs2238189	1.00[CHB][hapmap]
rs2286069	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2332835	1.00[CHB][hapmap]
rs4903015	1.00[CHB][hapmap]
rs4903029	0.80[CEU][hapmap];1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs7143154	1.00[CHB][hapmap]
rs7153543	0.82[YRI][hapmap]
rs7155105	1.00[CHB][hapmap]
rs7159439	1.00[CHB][hapmap]
rs7160019	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs8013020	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs9989171	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	esv1843592	chr14:72967991-73007547	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1157500	ZNF410	cis	cerebellum	SCAN

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72984400-73011000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:72986800-72996200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:72989800-72996000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr14:72989800-72997600	Enhancers	HSMM	muscle
5	chr14:72991200-72998600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr14:72991200-72998800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr14:72991400-72998200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr14:72991400-73001600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr14:72991800-72997600	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr14:72992200-72998000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr14:72992200-73001400	Weak transcription	Spleen	Spleen
12	chr14:72994400-72996400	Enhancers	Ovary	ovary
13	chr14:72994400-72996600	Enhancers	Fetal Stomach	stomach
14	chr14:72994600-72996000	Enhancers	Liver	Liver
15	chr14:72994800-72997200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:72995000-72996000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
17	chr14:72995000-72996000	Enhancers	Fetal Thymus	thymus
18	chr14:72995000-72996200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:72995000-72996200	Enhancers	HUVEC	blood vessel
20	chr14:72995000-72996800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr14:72995000-72997000	Enhancers	Fetal Lung	lung
22	chr14:72995000-72997000	Enhancers	NH-A	brain
23	chr14:72995200-72997000	Enhancers	Brain Germinal Matrix	brain
24	chr14:72995400-72996000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr14:72995400-72996000	Enhancers	Fetal Muscle Leg	muscle
26	chr14:72995400-72996200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:72995400-72996600	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr14:72995400-72997600	Weak transcription	GM12878-XiMat	blood
29	chr14:72995400-72997600	Enhancers	HSMMtube	muscle
30	chr14:72995600-72997000	Enhancers	HMEC	breast
31	chr14:72995800-72996000	Enhancers	Primary B cells from cord blood	blood
32	chr14:72995800-72996000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr14:72995800-72996200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
34	chr14:72995800-72997400	Weak transcription	Primary B cells from peripheral blood	blood
35	chr14:72995800-73000200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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