Variant report

Variant	rs11158958
Chromosome Location	chr14:72967991-72967992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1157500	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs11621408	1.00[ASN][1000 genomes]
rs2238189	1.00[CHB][hapmap]
rs2286069	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2332835	1.00[CHB][hapmap]
rs4903015	1.00[CHB][hapmap]
rs4903029	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7143154	1.00[CHB][hapmap]
rs7153543	0.82[YRI][hapmap]
rs7155105	1.00[CHB][hapmap]
rs7159439	1.00[CHB][hapmap]
rs7160019	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8013020	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9989171	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	esv1843592	chr14:72967991-73007547	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72956600-72980400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:72965400-72970800	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:72966600-72968000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr14:72967200-72968000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:72967600-72970400	Weak transcription	HMEC	breast
6	chr14:72967800-72968200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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