Variant report

Variant	rs2238189
Chromosome Location	chr14:72907076-72907077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10131300	0.81[CEU][hapmap];0.90[ASN][1000 genomes]
rs10151157	0.91[CEU][hapmap]
rs11158958	1.00[CHB][hapmap]
rs1155166	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1157500	1.00[CHB][hapmap]
rs11628490	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs12433564	0.81[CEU][hapmap];0.90[ASN][1000 genomes]
rs12436059	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860152	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs2159194	0.90[ASN][1000 genomes]
rs2286069	1.00[CHB][hapmap]
rs2332835	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903015	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs4903019	0.87[EUR][1000 genomes]
rs4903020	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs4903022	0.86[EUR][1000 genomes]
rs4903025	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4903026	0.90[ASN][1000 genomes]
rs4903029	1.00[CHB][hapmap]
rs6574077	0.90[ASN][1000 genomes]
rs7143134	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs7143154	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143912	0.92[CEU][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7146819	0.81[EUR][1000 genomes]
rs7153455	0.92[CEU][hapmap]
rs7155105	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7158962	0.92[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159439	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs7159534	0.81[YRI][hapmap];0.83[AFR][1000 genomes]
rs7160019	1.00[CHB][hapmap]
rs719064	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs758265	0.81[CEU][hapmap]
rs8012037	0.81[CEU][hapmap]
rs8013020	1.00[CHB][hapmap]
rs8018108	0.96[CEU][hapmap]
rs9989171	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72891000-72908600	Weak transcription	Left Ventricle	heart
2	chr14:72904800-72909000	Enhancers	Fetal Thymus	thymus
3	chr14:72905600-72908800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:72905600-72911200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr14:72905600-72912200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr14:72905800-72907800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr14:72905800-72908600	Enhancers	Primary T cells from cord blood	blood
8	chr14:72905800-72908600	Enhancers	Primary hematopoietic stem cells	blood
9	chr14:72905800-72909200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr14:72906000-72907200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr14:72906000-72908000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr14:72906200-72907200	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr14:72906200-72907200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr14:72906200-72907200	Enhancers	GM12878-XiMat	blood
15	chr14:72906200-72907800	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr14:72906200-72908200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr14:72906200-72908200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr14:72906200-72908200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr14:72906200-72908800	Enhancers	Primary T cells fromperipheralblood	blood
20	chr14:72906400-72908000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr14:72906600-72907600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr14:72906600-72907800	Weak transcription	Spleen	Spleen
23	chr14:72906600-72913600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr14:72907000-72907400	Enhancers	Dnd41	blood
25	chr14:72907000-72909400	Weak transcription	Primary B cells from peripheral blood	blood
26	chr14:72907000-72909800	Weak transcription	Primary B cells from cord blood	blood
27	chr14:72907000-72910200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr14:72907000-72910200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr14:72907000-72912000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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