Variant report

Variant	rs4903020
Chromosome Location	chr14:72911752-72911753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1004477	0.80[CHB][hapmap];0.93[JPT][hapmap]
rs10139793	0.82[ASN][1000 genomes]
rs10151157	0.91[CEU][hapmap]
rs1155166	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs11628490	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436059	0.90[EUR][1000 genomes]
rs12436819	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17115530	0.84[JPT][hapmap]
rs17115702	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs17115708	0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1860152	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2238189	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs2238190	0.80[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs2239211	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2332835	0.96[CEU][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs4903015	0.88[CEU][hapmap]
rs4903019	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903022	0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4903025	0.86[EUR][1000 genomes]
rs58470149	0.90[ASN][1000 genomes]
rs7143134	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7143154	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs7143912	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs7146819	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7153455	0.88[CEU][hapmap]
rs7155105	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs7158962	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs7159438	0.95[YRI][hapmap]
rs719064	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs740536	0.90[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs8018108	0.92[CEU][hapmap]
rs8022670	0.90[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs9989171	0.96[CEU][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72905600-72912200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr14:72906600-72913600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:72907000-72912000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr14:72908400-72917600	Weak transcription	Lung	lung
5	chr14:72909400-72911800	Enhancers	Fetal Thymus	thymus
6	chr14:72909400-72912000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr14:72909600-72911800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr14:72909600-72911800	Enhancers	HSMMtube	muscle
9	chr14:72909800-72911800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr14:72909800-72911800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr14:72909800-72911800	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr14:72910000-72911800	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr14:72910000-72911800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr14:72910000-72911800	Genic enhancers	Cortex derived primary cultured neurospheres	brain
15	chr14:72910000-72911800	Enhancers	Duodenum Mucosa	Duodenum
16	chr14:72910000-72911800	Enhancers	HSMM	muscle
17	chr14:72910000-72912000	Enhancers	Primary T cells fromperipheralblood	blood
18	chr14:72910200-72911800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr14:72910200-72912000	Enhancers	Primary hematopoietic stem cells	blood
20	chr14:72911000-72911800	Enhancers	Primary B cells from peripheral blood	blood
21	chr14:72911000-72912000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr14:72911200-72911800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr14:72911400-72911800	Enhancers	GM12878-XiMat	blood
24	chr14:72911400-72912000	Enhancers	Primary T cells from cord blood	blood
25	chr14:72911600-72912000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr14:72911600-72912400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr14:72911600-72912400	Weak transcription	Gastric	stomach
28	chr14:72911600-72916200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr14:72911600-72916400	Weak transcription	Fetal Muscle Trunk	muscle
30	chr14:72911600-72916400	Weak transcription	Dnd41	blood

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