Variant report

Variant	rs7153455
Chromosome Location	chr14:72891476-72891477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10131300	1.00[CHD][hapmap]
rs10151157	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1155166	0.92[CEU][hapmap]
rs11628490	0.88[CEU][hapmap]
rs1860152	0.88[CEU][hapmap]
rs2238189	0.92[CEU][hapmap]
rs2332835	0.92[CEU][hapmap];1.00[CHD][hapmap]
rs4903015	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903020	0.88[CEU][hapmap]
rs7143134	0.88[CEU][hapmap]
rs7143154	0.92[CEU][hapmap]
rs7143912	0.92[CEU][hapmap]
rs7155105	0.92[CEU][hapmap]
rs7158962	0.92[CEU][hapmap]
rs7159534	1.00[CHB][hapmap];0.91[GIH][hapmap];0.85[LWK][hapmap]
rs7160019	1.00[CHB][hapmap]
rs719064	0.88[CEU][hapmap]
rs8018108	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9989171	0.92[CEU][hapmap];1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7153455	VSX2	cis	parietal	SCAN
rs7153455	ZNF410	cis	parietal	SCAN
rs7153455	C14orf162	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72890200-72893000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72890200-72893600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:72891000-72908600	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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