Variant report

Variant	rs4903025
Chromosome Location	chr14:72924245-72924246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10131300	1.00[ASN][1000 genomes]
rs1155166	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11628490	0.86[EUR][1000 genomes]
rs12433564	1.00[ASN][1000 genomes]
rs12436059	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1860152	0.86[EUR][1000 genomes]
rs2159194	1.00[ASN][1000 genomes]
rs2238189	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2332835	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4903019	0.86[EUR][1000 genomes]
rs4903020	0.86[EUR][1000 genomes]
rs4903022	0.86[EUR][1000 genomes]
rs4903026	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6574077	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7143134	0.86[EUR][1000 genomes]
rs7143154	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7143912	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7146819	0.85[EUR][1000 genomes]
rs7155105	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7158962	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7159439	1.00[ASN][1000 genomes]
rs719064	0.83[EUR][1000 genomes]
rs758265	0.90[ASN][1000 genomes]
rs8012037	0.90[ASN][1000 genomes]
rs9989171	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72918000-72924400	Weak transcription	Spleen	Spleen
2	chr14:72918000-72930000	Weak transcription	Right Atrium	heart
3	chr14:72918200-72929000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr14:72918200-72930000	Weak transcription	Left Ventricle	heart
5	chr14:72919000-72931400	Weak transcription	Adipose Nuclei	Adipose
6	chr14:72919400-72926800	Weak transcription	Fetal Intestine Small	intestine
7	chr14:72919400-72945200	Weak transcription	Brain Germinal Matrix	brain
8	chr14:72919800-72924400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr14:72919800-72927400	Weak transcription	Fetal Muscle Leg	muscle
10	chr14:72921400-72924400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:72922400-72924400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:72923400-72924400	Weak transcription	Esophagus	oesophagus
13	chr14:72923800-72946200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:72924000-72924600	Enhancers	HSMMtube	muscle
15	chr14:72924000-72925200	Enhancers	Osteobl	bone
16	chr14:72924200-72924800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr14:72924200-72924800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr14:72924200-72925000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:72924200-72925000	Enhancers	HSMM	muscle
20	chr14:72924200-72925200	Enhancers	NH-A	brain
21	chr14:72924200-72927400	Strong transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links