Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10131300	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158958	1.00[CHB][hapmap]
rs1155166	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs1157500	1.00[CHB][hapmap]
rs12433564	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436059	0.90[ASN][1000 genomes]
rs1548686	0.83[EUR][1000 genomes]
rs2159194	1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2238189	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs2286069	1.00[CHB][hapmap]
rs2332835	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs4903015	1.00[CHB][hapmap]
rs4903025	1.00[ASN][1000 genomes]
rs4903026	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903029	1.00[CHB][hapmap]
rs6574077	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143154	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs7143912	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7155105	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs7155884	1.00[CHB][hapmap]
rs7158962	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs7160019	1.00[CHB][hapmap]
rs758265	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8012037	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8013020	1.00[CHB][hapmap]
rs9989171	1.00[CHB][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72919000-72931400	Weak transcription	Adipose Nuclei	Adipose
2	chr14:72919400-72945200	Weak transcription	Brain Germinal Matrix	brain
3	chr14:72923800-72946200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:72929600-72931400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:72929800-72934000	Weak transcription	Gastric	stomach
6	chr14:72930200-72931400	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr14:72930200-72943400	Weak transcription	Left Ventricle	heart
8	chr14:72930400-72943000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:72930600-72934000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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