Variant report

Variant	rs740536
Chromosome Location	chr14:72902665-72902666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1004477	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10132956	0.83[AMR][1000 genomes]
rs10139793	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10145775	1.00[CEU][hapmap]
rs11628490	0.90[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs12436819	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17115503	1.00[CEU][hapmap]
rs17115530	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs17115684	1.00[CEU][hapmap]
rs17115702	1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17115708	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs17115950	1.00[CEU][hapmap]
rs17116023	1.00[CEU][hapmap]
rs17116029	1.00[CEU][hapmap]
rs17116069	1.00[CEU][hapmap]
rs17116212	1.00[CEU][hapmap]
rs17116237	1.00[CEU][hapmap]
rs17116276	1.00[CEU][hapmap]
rs17116292	1.00[CEU][hapmap]
rs17116396	1.00[CEU][hapmap]
rs17116464	1.00[CEU][hapmap]
rs1860152	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2007903	0.91[ASN][1000 genomes]
rs2238190	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2239211	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs28428926	0.86[ASN][1000 genomes]
rs3784046	1.00[CEU][hapmap]
rs3819548	0.88[AMR][1000 genomes]
rs4396472	0.85[AMR][1000 genomes]
rs4903019	0.83[ASN][1000 genomes]
rs4903020	0.90[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs4903022	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4903023	0.82[JPT][hapmap]
rs58470149	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58482573	0.90[AMR][1000 genomes]
rs7143134	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7146819	0.81[ASN][1000 genomes]
rs7160223	0.82[JPT][hapmap]
rs719064	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs8022670	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72891000-72908600	Weak transcription	Left Ventricle	heart
2	chr14:72900400-72902800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr14:72900800-72904400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:72901000-72902800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr14:72901200-72906800	Enhancers	Dnd41	blood
6	chr14:72901400-72904600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr14:72901800-72904400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:72902200-72905600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr14:72902400-72905800	Weak transcription	Primary T cells from cord blood	blood
10	chr14:72902600-72902800	Enhancers	Fetal Thymus	thymus
11	chr14:72902600-72905200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links