Variant report

Variant	rs17115503
Chromosome Location	chr14:72887897-72887898
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1004477	1.00[CEU][hapmap]
rs10145775	1.00[CEU][hapmap]
rs17115530	1.00[CEU][hapmap]
rs17115684	1.00[CEU][hapmap]
rs17115708	1.00[CEU][hapmap]
rs17115950	1.00[CEU][hapmap]
rs17116023	1.00[CEU][hapmap]
rs17116029	1.00[CEU][hapmap]
rs17116069	1.00[CEU][hapmap]
rs17116212	1.00[CEU][hapmap]
rs17116237	1.00[CEU][hapmap]
rs17116276	1.00[CEU][hapmap]
rs17116292	1.00[CEU][hapmap]
rs17116396	1.00[CEU][hapmap]
rs17116464	1.00[CEU][hapmap]
rs2238190	1.00[CEU][hapmap]
rs2239211	1.00[CEU][hapmap]
rs3784046	1.00[CEU][hapmap]
rs740536	1.00[CEU][hapmap]
rs8022670	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72884800-72888000	Enhancers	Fetal Brain Male	brain
2	chr14:72885200-72888400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr14:72885600-72888000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:72886200-72888000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr14:72886400-72888000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr14:72886600-72888000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr14:72887000-72888000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr14:72887200-72888200	Enhancers	Stomach Smooth Muscle	stomach
9	chr14:72887400-72888200	Enhancers	Fetal Stomach	stomach
10	chr14:72887600-72888000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr14:72887600-72888000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr14:72887600-72888000	Enhancers	GM12878-XiMat	blood
13	chr14:72887800-72888000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr14:72887800-72888000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr14:72887800-72888000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:72887800-72888000	Enhancers	Fetal Lung	lung
17	chr14:72887800-72888000	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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