Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72937315..72940089-chr14:72941556..72943605,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1004477	1.00[CEU][hapmap]
rs10145775	1.00[CEU][hapmap]
rs17115503	1.00[CEU][hapmap]
rs17115530	1.00[CEU][hapmap]
rs17115684	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17115708	1.00[CEU][hapmap]
rs17115950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17116023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17116029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17116069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17116237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17116276	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17116292	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17116396	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17116464	1.00[CEU][hapmap]
rs2238178	0.87[ASN][1000 genomes]
rs2238190	1.00[CEU][hapmap]
rs2239211	1.00[CEU][hapmap]
rs3784046	1.00[CEU][hapmap]
rs45601334	0.87[ASN][1000 genomes]
rs59884363	0.97[ASN][1000 genomes]
rs61303255	0.89[ASN][1000 genomes]
rs740536	1.00[CEU][hapmap]
rs8022670	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72919400-72945200	Weak transcription	Brain Germinal Matrix	brain
2	chr14:72923800-72946200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:72930200-72943400	Weak transcription	Left Ventricle	heart
4	chr14:72930400-72943000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:72933800-72942000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:72934400-72943400	Weak transcription	Spleen	Spleen
7	chr14:72935600-72941600	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr14:72936000-72946200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:72936800-72940200	Weak transcription	Fetal Brain Female	brain
10	chr14:72937600-72943000	Weak transcription	Fetal Muscle Leg	muscle
11	chr14:72938200-72939600	Enhancers	Dnd41	blood
12	chr14:72938400-72939600	Enhancers	Fetal Thymus	thymus
13	chr14:72938600-72938800	Enhancers	Thymus	Thymus
14	chr14:72938600-72939400	Enhancers	Primary T cells from cord blood	blood
15	chr14:72938600-72943400	Weak transcription	Lung	lung

Quick Search: