Variant report

Variant	rs2238178
Chromosome Location	chr14:72952976-72952977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17115684	1.00[EUR][1000 genomes]
rs17115950	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17116023	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17116029	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17116069	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17116212	0.87[ASN][1000 genomes]
rs17116237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17116276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17116292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17116396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17116464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3784046	1.00[EUR][1000 genomes]
rs45601334	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56884598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59189869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59884363	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61303255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72944000-72957600	Weak transcription	Left Ventricle	heart
2	chr14:72948400-72953600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:72949400-72962600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:72950000-72953400	Weak transcription	Adipose Nuclei	Adipose
5	chr14:72950200-72953200	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:72952200-72954400	Weak transcription	Right Ventricle	heart
7	chr14:72952800-72953400	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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