Variant report

Variant	rs17116023
Chromosome Location	chr14:72924715-72924716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr14:72924359-72924763	MCF10A-Er-Src	breast:	n/a	chr14:72924438-72924447
2	FOS	chr14:72924341-72924763	MCF10A-Er-Src	breast:	n/a	chr14:72924438-72924447
3	FOS	chr14:72924408-72924760	MCF10A-Er-Src	breast:	n/a	chr14:72924438-72924447
4	POLR2A	chr14:72924359-72924735	U87	brain:	n/a	n/a
5	FOS	chr14:72924364-72924764	MCF10A-Er-Src	breast:	n/a	chr14:72924438-72924447
6	CEBPB	chr14:72924377-72924769	Hela-S3	cervix:	n/a	n/a
7	CEBPB	chr14:72924384-72924926	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
RGS6	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1004477	1.00[CEU][hapmap]
rs10145775	1.00[CEU][hapmap]
rs17115503	1.00[CEU][hapmap]
rs17115530	1.00[CEU][hapmap]
rs17115684	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17115708	1.00[CEU][hapmap]
rs17115950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17116237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17116276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17116292	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17116396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17116464	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2238178	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2238190	1.00[CEU][hapmap]
rs2239211	1.00[CEU][hapmap]
rs3784046	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45601334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56884598	1.00[EUR][1000 genomes]
rs59189869	1.00[EUR][1000 genomes]
rs59884363	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61303255	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs740536	1.00[CEU][hapmap]
rs8022670	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72918000-72930000	Weak transcription	Right Atrium	heart
2	chr14:72918200-72929000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr14:72918200-72930000	Weak transcription	Left Ventricle	heart
4	chr14:72919000-72931400	Weak transcription	Adipose Nuclei	Adipose
5	chr14:72919400-72926800	Weak transcription	Fetal Intestine Small	intestine
6	chr14:72919400-72945200	Weak transcription	Brain Germinal Matrix	brain
7	chr14:72919800-72927400	Weak transcription	Fetal Muscle Leg	muscle
8	chr14:72923800-72946200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:72924000-72925200	Enhancers	Osteobl	bone
10	chr14:72924200-72924800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr14:72924200-72924800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr14:72924200-72925000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:72924200-72925000	Enhancers	HSMM	muscle
14	chr14:72924200-72925200	Enhancers	NH-A	brain
15	chr14:72924200-72927400	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr14:72924400-72924800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:72924400-72925000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:72924400-72925000	Enhancers	Spleen	Spleen
19	chr14:72924400-72926000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr14:72924400-72927800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr14:72924600-72925000	Bivalent Enhancer	HSMMtube	muscle

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