Variant report

Variant	rs17115708
Chromosome Location	chr14:72909583-72909584
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72566736..72569585-chr14:72907798..72910689,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1004477	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs10139793	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10145775	1.00[CEU][hapmap]
rs11628490	0.90[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs12436819	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17115503	1.00[CEU][hapmap]
rs17115530	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs17115684	1.00[CEU][hapmap]
rs17115702	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17115950	1.00[CEU][hapmap]
rs17116023	1.00[CEU][hapmap]
rs17116029	1.00[CEU][hapmap]
rs17116069	1.00[CEU][hapmap]
rs17116212	1.00[CEU][hapmap]
rs17116237	1.00[CEU][hapmap]
rs17116276	1.00[CEU][hapmap]
rs17116292	1.00[CEU][hapmap]
rs17116396	1.00[CEU][hapmap]
rs17116464	1.00[CEU][hapmap]
rs1860152	0.93[JPT][hapmap]
rs2007903	0.86[ASN][1000 genomes]
rs2238190	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs2239211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs28428926	0.82[ASN][1000 genomes]
rs3784046	1.00[CEU][hapmap]
rs4903019	0.87[ASN][1000 genomes]
rs4903020	0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4903022	0.88[JPT][hapmap]
rs58470149	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7143134	0.83[CHD][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs719064	0.90[CHB][hapmap];0.82[CHD][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs740536	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs8022670	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72905600-72911200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr14:72905600-72912200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:72906600-72913600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:72907000-72909800	Weak transcription	Primary B cells from cord blood	blood
5	chr14:72907000-72910200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr14:72907000-72910200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr14:72907000-72912000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr14:72907200-72909600	Weak transcription	GM12878-XiMat	blood
9	chr14:72907200-72910000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr14:72907800-72909800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr14:72907800-72910000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr14:72907800-72911400	Weak transcription	Gastric	stomach
13	chr14:72908000-72910000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr14:72908000-72910000	Weak transcription	Spleen	Spleen
15	chr14:72908200-72909800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr14:72908200-72909800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr14:72908400-72910000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr14:72908400-72917600	Weak transcription	Lung	lung
19	chr14:72908600-72910200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr14:72908800-72910000	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr14:72908800-72910800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr14:72909000-72910600	Enhancers	Primary T cells from cord blood	blood
23	chr14:72909200-72909600	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr14:72909200-72910400	Weak transcription	Dnd41	blood
25	chr14:72909400-72910000	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr14:72909400-72910600	Enhancers	Primary B cells from peripheral blood	blood
27	chr14:72909400-72911800	Enhancers	Fetal Thymus	thymus
28	chr14:72909400-72912000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links