Variant report

Variant	rs12436819
Chromosome Location	chr14:72913232-72913233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1004477	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10132956	0.91[AMR][1000 genomes]
rs10139793	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10149051	0.84[AMR][1000 genomes]
rs11628490	0.90[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs17115530	0.89[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs17115702	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17115708	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1860152	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2007903	0.86[ASN][1000 genomes]
rs2238190	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2239211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28428926	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3819548	0.81[AMR][1000 genomes]
rs4903019	0.90[ASN][1000 genomes]
rs4903020	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4903022	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs58470149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58482573	0.84[AMR][1000 genomes]
rs7143134	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs719064	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs740536	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8022670	1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72906600-72913600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72908400-72917600	Weak transcription	Lung	lung
3	chr14:72911600-72916200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:72911600-72916400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:72911600-72916400	Weak transcription	Dnd41	blood
6	chr14:72911800-72913800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr14:72911800-72916200	Weak transcription	GM12878-XiMat	blood
8	chr14:72911800-72917200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr14:72911800-72917200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr14:72911800-72917600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr14:72912000-72916400	Weak transcription	Primary T cells from cord blood	blood
12	chr14:72912000-72917000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr14:72912000-72917200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr14:72912000-72917400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr14:72912200-72917400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr14:72912400-72913600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr14:72912600-72914000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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