Variant report

Variant	rs17115702
Chromosome Location	chr14:72909105-72909106
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72566736..72569585-chr14:72907798..72910689,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1004477	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs10132956	0.91[MEX][hapmap];0.91[AMR][1000 genomes]
rs10139793	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10149051	0.84[AMR][1000 genomes]
rs11628490	0.90[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs12436819	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17115530	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs17115708	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2007903	0.85[ASN][1000 genomes]
rs2238190	0.84[ASW][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];0.81[MEX][hapmap];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2239211	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28428926	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3819548	0.81[AMR][1000 genomes]
rs4903019	0.86[ASN][1000 genomes]
rs4903020	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs58470149	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58482573	0.84[AMR][1000 genomes]
rs719064	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs740536	1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8022670	1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72905600-72911200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr14:72905600-72912200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:72905800-72909200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr14:72906600-72913600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:72907000-72909400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr14:72907000-72909800	Weak transcription	Primary B cells from cord blood	blood
7	chr14:72907000-72910200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr14:72907000-72910200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr14:72907000-72912000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr14:72907200-72909600	Weak transcription	GM12878-XiMat	blood
11	chr14:72907200-72910000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr14:72907800-72909200	Enhancers	Dnd41	blood
13	chr14:72907800-72909800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr14:72907800-72910000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr14:72907800-72911400	Weak transcription	Gastric	stomach
16	chr14:72908000-72909400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr14:72908000-72910000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr14:72908000-72910000	Weak transcription	Spleen	Spleen
19	chr14:72908200-72909800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr14:72908200-72909800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr14:72908400-72909400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr14:72908400-72910000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr14:72908400-72917600	Weak transcription	Lung	lung
24	chr14:72908600-72909200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr14:72908600-72910200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr14:72908800-72910000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr14:72908800-72910800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr14:72909000-72909400	Weak transcription	Fetal Thymus	thymus
29	chr14:72909000-72910600	Enhancers	Primary T cells from cord blood	blood

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