Variant report

Variant	rs7160223
Chromosome Location	chr14:72899529-72899530
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1004477	0.82[JPT][hapmap]
rs1860152	0.82[JPT][hapmap]
rs2238182	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2238190	0.82[JPT][hapmap]
rs4903023	0.85[CHB][hapmap];0.92[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.80[MKK][hapmap];0.91[ASN][1000 genomes]
rs7143134	0.81[CHD][hapmap];0.82[JPT][hapmap]
rs7159438	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs719064	0.87[JPT][hapmap]
rs740536	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72891000-72908600	Weak transcription	Left Ventricle	heart
2	chr14:72895400-72901000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:72897800-72900600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr14:72899000-72901200	Weak transcription	Dnd41	blood
5	chr14:72899200-72900400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:72899200-72901600	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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