Variant report

Variant	rs2238182
Chromosome Location	chr14:72927197-72927198
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2238190	0.82[JPT][hapmap]
rs28496493	0.83[ASN][1000 genomes]
rs4903023	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4903027	0.96[CEU][hapmap]
rs7143134	0.82[JPT][hapmap]
rs7159438	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7160223	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs719064	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72918000-72930000	Weak transcription	Right Atrium	heart
2	chr14:72918200-72929000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr14:72918200-72930000	Weak transcription	Left Ventricle	heart
4	chr14:72919000-72931400	Weak transcription	Adipose Nuclei	Adipose
5	chr14:72919400-72945200	Weak transcription	Brain Germinal Matrix	brain
6	chr14:72919800-72927400	Weak transcription	Fetal Muscle Leg	muscle
7	chr14:72923800-72946200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:72924200-72927400	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr14:72924400-72927800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:72924800-72930000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:72924800-72930000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr14:72925200-72930000	Weak transcription	NH-A	brain
13	chr14:72925400-72930200	Weak transcription	NHLF	lung
14	chr14:72926000-72930000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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