Variant report

Variant	rs1468413
Chromosome Location	chr7:86433653-86433654
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10085471	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10234440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10246519	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs10254088	0.85[CHB][hapmap]
rs10266758	0.81[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10268818	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10280549	0.85[CEU][hapmap];0.81[CHB][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs10487052	0.93[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap]
rs13229442	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17608250	1.00[ASW][hapmap]
rs2158786	0.81[CHB][hapmap]
rs2190301	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299219	0.85[CEU][hapmap];0.81[CHB][hapmap];0.81[CHD][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs2299226	0.85[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs36165845	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6975875	0.91[ASN][1000 genomes]
rs723630	0.93[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap]
rs723631	0.81[CHB][hapmap]
rs727989	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs7341512	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs970186	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs982339	0.93[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831053	chr7:86268171-86440999	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86423000-86444200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:86432200-86441600	Weak transcription	Brain Anterior Caudate	brain

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