Variant report

Variant	rs2158786
Chromosome Location	chr7:86406018-86406019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:86392585..86394731-chr7:86405816..86407670,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10234440	0.81[CHB][hapmap]
rs10246519	0.91[CEU][hapmap];0.87[CHB][hapmap];0.89[EUR][1000 genomes]
rs10254088	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10266758	0.87[CHB][hapmap]
rs10277739	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs10280549	0.87[CHB][hapmap];0.92[JPT][hapmap]
rs10487052	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs12690900	0.89[EUR][1000 genomes]
rs12704288	0.89[EUR][1000 genomes]
rs13229442	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs13231431	0.89[EUR][1000 genomes]
rs1468412	0.94[CHB][hapmap];0.91[JPT][hapmap]
rs1468413	0.81[CHB][hapmap]
rs2237561	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237562	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs2250784	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2282965	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2299219	0.87[CHB][hapmap];0.92[JPT][hapmap]
rs2299226	0.87[CHB][hapmap]
rs6465084	0.89[EUR][1000 genomes]
rs6961677	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6965999	0.89[EUR][1000 genomes]
rs6970642	0.89[EUR][1000 genomes]
rs720025	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs723630	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs723631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs727989	0.91[CEU][hapmap];0.87[CHB][hapmap];0.89[EUR][1000 genomes]
rs7341512	0.86[CEU][hapmap];0.80[CHB][hapmap];0.86[EUR][1000 genomes]
rs7804907	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs7806785	0.94[CHB][hapmap];0.91[JPT][hapmap]
rs970186	0.87[CHB][hapmap]
rs982339	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831053	chr7:86268171-86440999	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86399000-86406800	Weak transcription	Brain Hippocampus Middle	brain
2	chr7:86399000-86415400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:86399800-86415400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:86403400-86412600	Weak transcription	GM12878-XiMat	blood
5	chr7:86405000-86407800	Enhancers	Brain Anterior Caudate	brain
6	chr7:86405200-86406400	Enhancers	Fetal Heart	heart
7	chr7:86405200-86406800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr7:86405400-86406600	Enhancers	Brain Substantia Nigra	brain
9	chr7:86405600-86408000	Enhancers	Brain Cingulate Gyrus	brain
10	chr7:86405800-86406600	Weak transcription	Brain Angular Gyrus	brain
11	chr7:86405800-86413000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:86406000-86406800	Weak transcription	Fetal Brain Female	brain

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