Variant report

Variant	rs147022888
Chromosome Location	chr6:58776106-58776107
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:26787771..26789874-chr6:58775360..58778093,2	MCF-7	breast:
2	chr3:90450072..90451589-chr6:58776092..58777719,4	MCF-7	breast:
3	chr20:52327864..52329489-chr6:58775870..58778258,2	MCF-7	breast:
4	chr1:201243876..201245779-chr6:58775647..58777227,2	MCF-7	breast:
5	chr6:58775076..58778073-chr8:103250732..103252303,2	K562	blood:
6	chr12:117585721..117587663-chr6:58775712..58777632,2	MCF-7	breast:
7	chr12:38031932..38033432-chr6:58775709..58777615,2	MCF-7	breast:
8	chr20:36661511..36663112-chr6:58773928..58776889,2	K562	blood:
9	chr17:57920709..57924714-chr6:58775095..58779071,5	MCF-7	breast:
10	chr17:57697051..57699517-chr6:58775454..58778452,2	MCF-7	breast:
11	chr6:58775915..58778901-chr8:144691705..144693500,2	MCF-7	breast:
12	chr1:117112641..117113268-chr6:58775753..58776519,2	MCF-7	breast:
13	chr14:19022553..19024053-chr6:58774785..58777168,2	MCF-7	breast:
14	chr20:17516282..17517977-chr6:58775914..58778767,2	MCF-7	breast:
15	chr20:46135534..46137185-chr6:58775644..58777423,2	MCF-7	breast:
16	chr16:85495639..85498852-chr6:58775657..58778770,3	MCF-7	breast:
17	chr10:74031778..74033740-chr6:58774757..58776794,2	MCF-7	breast:
18	chr17:57920187..57922882-chr6:58774753..58776582,2	MCF-7	breast:
19	chr20:46012525..46013472-chr6:58776071..58776784,2	MCF-7	breast:
20	chr12:80435495..80437852-chr6:58775102..58777367,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000101407	Chromatin interaction
ENSG00000048392	Chromatin interaction
ENSG00000141367	Chromatin interaction
ENSG00000104524	Chromatin interaction
ENSG00000101413	Chromatin interaction
ENSG00000168209	Chromatin interaction
ENSG00000246263	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv603237	chr6:58231219-58780055	Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
2	nsv427758	chr6:58502261-58780166	ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
3	nsv603242	chr6:58754939-58776198	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
4	nsv603243	chr6:58754939-58779628	Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
5	esv3401131	chr6:58771993-58780166	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
6	esv3348712	chr6:58772493-58780166	Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
7	esv3351952	chr6:58772493-58780166	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
8	esv3370259	chr6:58772493-58780166	Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
9	esv3402710	chr6:58772493-58780166	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
10	nsv821263	chr6:58773370-58780132	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
11	esv16605	chr6:58773521-58780132	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
12	esv3522846	chr6:58773602-58777174	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	30 gene(s)	inside rSNPs	diseases
13	esv3522847	chr6:58773602-58777174	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	30 gene(s)	inside rSNPs	diseases
14	esv4510	chr6:58773913-58779741	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
15	esv2440024	chr6:58773927-58778724	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
16	esv6861	chr6:58774124-58777928	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	51 gene(s)	inside rSNPs	diseases
17	nsv603244	chr6:58774249-58776961	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
18	esv8948	chr6:58774500-58779296	Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
19	esv5564	chr6:58774524-58778232	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	53 gene(s)	inside rSNPs	diseases
20	esv5877	chr6:58774642-58778682	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
21	esv8678	chr6:58775025-58778770	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
22	esv3517686	chr6:58775050-58776606	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
23	esv3517687	chr6:58775050-58776606	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
24	esv3345082	chr6:58775117-58777887	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	Chromatin interactive region	51 gene(s)	inside rSNPs	diseases
25	nsv603245	chr6:58775200-58778429	Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
26	nsv603246	chr6:58775200-58780055	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
27	esv3404794	chr6:58775461-58776606	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
28	esv6665	chr6:58775607-58776666	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
29	nsv603247	chr6:58775704-58778496	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
30	esv3502891	chr6:58775730-58777887	Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	51 gene(s)	inside rSNPs	diseases
31	esv3502892	chr6:58775730-58777887	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	51 gene(s)	inside rSNPs	diseases
32	esv6387	chr6:58775945-58777262	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	36 gene(s)	inside rSNPs	diseases
33	esv3376857	chr6:58776056-58776784	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:58773400-58776200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:58773400-58776200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:58773400-58776400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:58773400-58776400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr6:58773400-58776600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr6:58773400-58776600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr6:58773400-58776600	ZNF genes & repeats	Gastric	stomach
8	chr6:58773400-58776600	ZNF genes & repeats	Small Intestine	intestine
9	chr6:58773400-58779400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
10	chr6:58773400-58779400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:58773400-58779400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:58773400-58779400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
13	chr6:58773400-58779400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
14	chr6:58773400-58779400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
15	chr6:58773400-58779400	ZNF genes & repeats	Adipose Nuclei	Adipose
16	chr6:58773400-58779400	ZNF genes & repeats	Fetal Stomach	stomach
17	chr6:58773400-58779400	ZNF genes & repeats	Left Ventricle	heart
18	chr6:58773600-58776600	ZNF genes & repeats	Primary T cells from cord blood	blood
19	chr6:58773600-58776600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:58773600-58779200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
21	chr6:58773600-58779400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
22	chr6:58773600-58779400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
23	chr6:58773600-58779400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
24	chr6:58773600-58779400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
25	chr6:58773600-58779400	ZNF genes & repeats	Primary B cells from cord blood	blood
26	chr6:58773600-58779400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
27	chr6:58773600-58779400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:58773600-58779400	ZNF genes & repeats	Fetal Intestine Large	intestine
29	chr6:58774800-58776400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:58774800-58776400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:58774800-58776400	Weak transcription	Brain Germinal Matrix	brain
32	chr6:58774800-58776600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:58774800-58776600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:58774800-58776600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr6:58774800-58776600	Weak transcription	Primary B cells from peripheral blood	blood
36	chr6:58774800-58776600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr6:58774800-58776600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr6:58774800-58776600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:58774800-58776600	Weak transcription	Brain Hippocampus Middle	brain
40	chr6:58774800-58776600	Weak transcription	Esophagus	oesophagus
41	chr6:58774800-58776600	Weak transcription	Fetal Brain Male	brain
42	chr6:58774800-58776600	Weak transcription	Fetal Heart	heart
43	chr6:58774800-58776600	Weak transcription	Fetal Kidney	kidney
44	chr6:58774800-58776600	Weak transcription	Placenta	Placenta
45	chr6:58774800-58776600	Weak transcription	Lung	lung
46	chr6:58774800-58776600	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr6:58774800-58776600	Weak transcription	Right Atrium	heart
48	chr6:58774800-58776600	Weak transcription	Right Ventricle	heart
49	chr6:58774800-58776600	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr6:58774800-58776600	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links