Variant report

Variant	rs1470555
Chromosome Location	chr3:134383153-134383154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:134370814..134375265-chr3:134381984..134385819,4	MCF-7	breast:
2	chr3:134362110..134364024-chr3:134381671..134384527,2	MCF-7	breast:
3	chr3:134378728..134380382-chr3:134383107..134386104,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10212595	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs60863097	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72976212	0.83[ASN][1000 genomes]
rs72976219	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72976228	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72976233	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7637801	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134371000-134386800	Weak transcription	Pancreas	Pancrea
2	chr3:134378200-134384000	Weak transcription	Fetal Brain Male	brain
3	chr3:134380800-134385200	Enhancers	Fetal Muscle Trunk	muscle
4	chr3:134380800-134386600	Enhancers	Fetal Muscle Leg	muscle
5	chr3:134381600-134384200	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr3:134381600-134386200	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr3:134381600-134388400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr3:134382200-134384000	Enhancers	Stomach Smooth Muscle	stomach
9	chr3:134382200-134384400	Enhancers	Left Ventricle	heart
10	chr3:134382400-134383200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr3:134382400-134383200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:134382400-134383400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr3:134382400-134383600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:134382400-134383600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:134382400-134383600	Enhancers	HSMM	muscle
16	chr3:134382400-134384600	Enhancers	Fetal Brain Female	brain
17	chr3:134382400-134384800	Enhancers	Fetal Heart	heart
18	chr3:134382600-134383400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:134382600-134384400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr3:134382600-134385600	Enhancers	Right Ventricle	heart
21	chr3:134382800-134383400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
22	chr3:134382800-134383400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:134383000-134383200	Enhancers	NHEK	skin
24	chr3:134383000-134383200	Enhancers	Osteobl	bone
25	chr3:134383000-134383400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:134383000-134383400	Enhancers	Rectal Smooth Muscle	rectum
27	chr3:134383000-134383400	Enhancers	NH-A	brain
28	chr3:134383000-134383400	Enhancers	NHDF-Ad	bronchial
29	chr3:134383000-134383600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr3:134383000-134384000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr3:134383000-134384200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:134383000-134385200	Weak transcription	Psoas Muscle	Psoas
33	chr3:134383000-134386200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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