Variant report

Variant	rs60863097
Chromosome Location	chr3:134378242-134378243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10212595	0.86[ASN][1000 genomes]
rs1470555	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72976212	0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72976219	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72976228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72976233	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134371000-134386800	Weak transcription	Pancreas	Pancrea
2	chr3:134376800-134382800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:134377200-134379600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr3:134377200-134379800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:134377200-134379800	Enhancers	Psoas Muscle	Psoas
6	chr3:134377600-134379200	Enhancers	Fetal Muscle Leg	muscle
7	chr3:134377800-134379800	Enhancers	Fetal Heart	heart
8	chr3:134378000-134379800	Enhancers	Left Ventricle	heart
9	chr3:134378200-134378400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:134378200-134378800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr3:134378200-134384000	Weak transcription	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links