Variant report

Variant	rs1471345
Chromosome Location	chr8:108080665-108080666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:108080600..108081704-chr8:108543510..108545337,6	MCF-7	breast:
2	chr8:108080564..108081493-chr8:108508119..108508723,3	MCF-7	breast:
3	chr8:108080615..108081581-chr8:108544165..108544964,3	K562	blood:
4	chr8:108080620..108081304-chr8:108767705..108768455,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1381486	0.87[EUR][1000 genomes]
rs1461991	0.88[ASN][1000 genomes]
rs1461995	0.94[EUR][1000 genomes]
rs1461999	0.85[EUR][1000 genomes]
rs1462007	0.87[EUR][1000 genomes]
rs1462010	0.83[EUR][1000 genomes]
rs1462015	0.87[EUR][1000 genomes]
rs1988496	0.96[EUR][1000 genomes]
rs2219652	0.87[EUR][1000 genomes]
rs2615085	0.96[EUR][1000 genomes]
rs2615086	0.91[EUR][1000 genomes]
rs2927099	0.87[EUR][1000 genomes]
rs2927117	0.87[EUR][1000 genomes]
rs2927119	0.87[EUR][1000 genomes]
rs2927170	0.87[EUR][1000 genomes]
rs3019904	0.87[EUR][1000 genomes]
rs3019919	0.81[EUR][1000 genomes]
rs3019938	0.84[EUR][1000 genomes]
rs3019940	0.87[EUR][1000 genomes]
rs3019943	0.87[EUR][1000 genomes]
rs3019947	0.87[EUR][1000 genomes]
rs3019949	0.83[EUR][1000 genomes]
rs3019950	0.87[EUR][1000 genomes]
rs3019951	0.87[EUR][1000 genomes]
rs3019952	0.85[EUR][1000 genomes]
rs3019955	0.87[EUR][1000 genomes]
rs9720177	0.85[EUR][1000 genomes]
rs973373	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029202	chr8:107796289-108384241	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539712	chr8:107796289-108384241	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1034210	chr8:107796489-108384102	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539713	chr8:107796489-108384102	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv529383	chr8:107796490-108368465	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv915821	chr8:107796490-108393008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv916496	chr8:107813722-108338822	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028726	chr8:107816841-108392547	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv497805	chr8:107852509-108368371	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	esv3391198	chr8:108050825-108080952	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108080600-108081000	Enhancers	HSMMtube	muscle
2	chr8:108080600-108081400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:108080600-108081600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:108080600-108081800	Enhancers	Fetal Stomach	stomach
5	chr8:108080600-108081800	Enhancers	A549	lung
6	chr8:108080600-108082400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr8:108080600-108082400	Enhancers	Osteobl	bone

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